Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02959 ATGACTCCTCGCGTGGACGATTTCGAAAAGGACAATCTCTCCGCCACCGACGACGACGACGACGACGACGACGATGACGATGACGACGGCCTCAAGGAGGACATGGCCGCGCTCGCCCGAGCCTGCATGATTGCCGTCCCCCGCGCCGCCGACAATTCCACCGCCGAAGATGATATTCCGGCGGAGGACCCTCTCCTCCACGCCGGCGACGCCATCGTTCCCGCCGCCAACGACTCCGACGACGACGACGACGACGACGACCAAGACGACTTCGAGTGTCTCAAGAGAGTGCAGAGCCTCTACCAGCCCCTGTCCGTTCTTCCGCCGCTGACGCCGGCGGCGGCAGGGTCCGACGACGATGACGTGGACGACCTTGAGACGGTGCGCGCCATTATGAAAAGGTTTGGTACCTACGGCGAAGGTGGAATGGAGATGATGGTTGAGGGGGATCAGACCTCTGGCCCGGGCTACGAGGGTGACATAGCTAACAGCTCAATCCATTACGAATCAGATGCTGGTGAATTATGTCCTGTTTTTCAACATCCTAATGAGGCTGCCACCGAGGAATTGATGGAGAACATTGAAATGCAGCTTAGTGATTTTGTTGAGAGTTCTGAACCTGATGCCTGTGAGCCATCCAGATTACCACAGAAAAGATTGAGCTGTCCTCCTGTAGTTCAGTGTTTTGTTGATGCCATTAAGAAAAATAGGGATTTGCAGAGATTTATTAGAAGTAAGTTGATTGAGCTTGAGGCTAAAATTGAGGAAAACAAAAAGATAAGGAACAAAGTTAAAATTCTTAAGGACTTCCAGGCTTCATGCACTAGAAGAACAGGGAATGCATTATCACTGAAAAAAGATGCACGTGTTCAGTTAATATCTGCAAAAAAGTCTTTTGCTCCAAAGAACTCTAAGAAACATAAAAAGGTATCTGCAATGTGTTATGGCCCAGAAGAGAATTCTCATGTCGCTAATTATAGGATGGTATTGGAAAGATATCCACTTTCATTGGATCGAAAAAAATGGTCTAATGGAGAAAGGGAAAGTCTTTTGAAGGGAATTAAGCAACAATTCCAAGAAATGGTGCTTCAATTTTCACTTTCAGTCGATAGAACAAGTTCAGAGGGCTTGCTTGGAGATGCAAATGACATGGATAGTGTAATTGCATCTGTTAAAGATCTTGAAATCACACCAGAGAGGATTAGACAATTTTTACCAAAAGTTAATTGGGATCTGATAGCTTCCATGTATGTTGGTGGCCGTACTGGTGCTGAATGTGAATCAAGGTGGTTGAATTGTGAAGATCCTTTGATCAACCAAGGTGCATGGACTAATGAAGAGGACAAGTCTCTTTTACTTATTGTCCAAGATATGGGCATCAGGAACTGGTTTGATATTGCTGCATCATTTGGCACAAGCAGGACTCCATTTCAATGCTTGGCACGATTCCAAAGGAGCTTAAATCCTTCCATGCTAAATAGTGAATGGACTGAGGAAGAAGATTCTCAACTCTGTTCTGCTGTGGCATGTTTTGGTGATAGGGATTGGCAGTCTGTGGCTTCTGTTTTAGAACGGCGGACAGGAACCCAGTGCTCAAATAGATGGAAAAAATCCCTTTGTCCTGAGAAGAAAGGGAGCTTTACACGAGAGGAGGATATACGCTTAACAGTAGCAGTCATGCTTTTTGGACGGAAATGGAATCAAATAGCTAAATTTGTTCCTGGCCGGATCCAATCTCAGTGTAGGGACAGATACCTCAATAGTCTGGATCCTTCTTTGAAATGGGGTGGATGGACTGAGGAAGAGGATTTAAGATTAGAAGCTGCAATTGTCAAGCATGGATACTGCTGGTCTAAGATTGCTGAAGAAGTGCCTCCCCGTACTGATTCTCAATGCCGGAAGAGATGGAAGGTGTTATGTCCTGAACAAGTTCCTTTGCTTCAAGAAGCAAGAAAGAAGCAAAGGTCTATTATTGGTAGTAACTTTGTTGATCGAGAATCTGAACGCCCAACCATTACACTGAATGACTTTCTACCTTTACCTGCGTTAGCTCCAAAATCTGATGTAAATCTCCGCAAGAAGGGCAAATCAAGCAATGTTCCCAAGAAAATGAGCTCTAAGAAACGTGCAAAAAGAAATCGACTTTGTACCAAGGAAGTACAAGATACAGAGGTTTATAGCGATGATGGGATCAAGACTTGTGGTGAAGTCGTCTCAGTCTCTGCATGCAGCAATGTTCCCAAGAAGATGAGGTCGAAAAGACATGCAAAAAACACTCGAAATTGTCCCAAGGAAGTAGTGGATATATCTTGTAGTGACAAGGTCAAGACTTGTATTGAGGGTTCAACAAGTCAATCTACCTGTATTGCGAGTTCTGAAAATCAAGATTCAGACAACATAACTCTTGCATGCTTTTTACGCGACAAATCAAAGGAGATACTATCTAGATTTACCAAAGAGTTGAGTCAGGATTCCTTCTCCTCCTCTAGGATTATAGATGTTTCTAAGCAGGTTGAAAGTCAAGACCCATTTGATGACCTAAGTGGCTTGTCTGAGACATGTGACACTGTTGGAAATAAAAATTTGTTCGTGAAGCAGAATGTTGCTTCTGATAGACAAGTAGGAAAACCAGAGGATGCAAACACTTTGACAGGTGATGATGATGATATGACCCTTGCGTGCTTTCTGGGAGACAAACCTAAGAAAGGGAGTCAAGCTGCTAAAGGACATGGTGCACGCTCTTCTTCCAAATTGAAAAAGGGATCTGCATTACTATGTGAAGAGCATTGTGCAAGCAAGCTGACCATCATATCTGACGACAGTGGACCATCAATGTCAAAGCATGTCGAAGAGGAGACTGGTTTGCATGGTGGTGTTGCTGAACCAATGGACATCGTTGTGGAAGAAAAGGATGATGAGCTTCTTACTTCCTTCTTGCAAAACAGGCCAAAGAGGGAGCGAAAACGACCCAGTAGGTTTTCAGAAAGGTGA 2991 0.4457 MTPRVDDFEKDNLSATDDDDDDDDDDDDDGLKEDMAALARACMIAVPRAADNSTAEDDIPAEDPLLHAGDAIVPAANDSDDDDDDDDQDDFECLKRVQSLYQPLSVLPPLTPAAAGSDDDDVDDLETVRAIMKRFGTYGEGGMEMMVEGDQTSGPGYEGDIANSSIHYESDAGELCPVFQHPNEAATEELMENIEMQLSDFVESSEPDACEPSRLPQKRLSCPPVVQCFVDAIKKNRDLQRFIRSKLIELEAKIEENKKIRNKVKILKDFQASCTRRTGNALSLKKDARVQLISAKKSFAPKNSKKHKKVSAMCYGPEENSHVANYRMVLERYPLSLDRKKWSNGERESLLKGIKQQFQEMVLQFSLSVDRTSSEGLLGDANDMDSVIASVKDLEITPERIRQFLPKVNWDLIASMYVGGRTGAECESRWLNCEDPLINQGAWTNEEDKSLLLIVQDMGIRNWFDIAASFGTSRTPFQCLARFQRSLNPSMLNSEWTEEEDSQLCSAVACFGDRDWQSVASVLERRTGTQCSNRWKKSLCPEKKGSFTREEDIRLTVAVMLFGRKWNQIAKFVPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDLRLEAAIVKHGYCWSKIAEEVPPRTDSQCRKRWKVLCPEQVPLLQEARKKQRSIIGSNFVDRESERPTITLNDFLPLPALAPKSDVNLRKKGKSSNVPKKMSSKKRAKRNRLCTKEVQDTEVYSDDGIKTCGEVVSVSACSNVPKKMRSKRHAKNTRNCPKEVVDISCSDKVKTCIEGSTSQSTCIASSENQDSDNITLACFLRDKSKEILSRFTKELSQDSFSSSRIIDVSKQVESQDPFDDLSGLSETCDTVGNKNLFVKQNVASDRQVGKPEDANTLTGDDDDMTLACFLGDKPKKGSQAAKGHGARSSSKLKKGSALLCEEHCASKLTIISDDSGPSMSKHVEEETGLHGGVAEPMDIVVEEKDDELLTSFLQNRPKRERKRPSRFSER 996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02959 996 SUPERFAMILY Homeodomain-like 416 483 IPR009057 -
Pumo6g02959 996 CDD SANT 442 487 IPR001005 -
Pumo6g02959 996 MobiDBLite consensus disorder prediction 696 714 - -
Pumo6g02959 996 SUPERFAMILY Homeodomain-like 491 585 IPR009057 -
Pumo6g02959 996 CDD SANT 397 432 IPR001005 -
Pumo6g02959 996 CDD SANT 598 639 IPR001005 -
Pumo6g02959 996 Gene3D - 494 542 - -
Pumo6g02959 996 Gene3D - 543 595 - -
Pumo6g02959 996 CDD SANT 546 589 IPR001005 -
Pumo6g02959 996 CDD SANT 495 539 IPR001005 -
Pumo6g02959 996 MobiDBLite consensus disorder prediction 1 33 - -
Pumo6g02959 996 MobiDBLite consensus disorder prediction 688 714 - -
Pumo6g02959 996 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 488 543 IPR017930 -
Pumo6g02959 996 SMART sant 439 489 IPR001005 -
Pumo6g02959 996 SMART sant 543 591 IPR001005 -
Pumo6g02959 996 SMART sant 492 541 IPR001005 -
Pumo6g02959 996 SMART sant 338 436 IPR001005 -
Pumo6g02959 996 SMART sant 594 642 IPR001005 -
Pumo6g02959 996 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 590 644 IPR017930 -
Pumo6g02959 996 MobiDBLite consensus disorder prediction 50 89 - -
Pumo6g02959 996 ProSiteProfiles Myb-like domain profile. 488 539 IPR001005 -
Pumo6g02959 996 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 544 589 IPR017930 -
Pumo6g02959 996 MobiDBLite consensus disorder prediction 976 996 - -
Pumo6g02959 996 SUPERFAMILY Homeodomain-like 569 641 IPR009057 -
Pumo6g02959 996 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 22 962 - -
Pumo6g02959 996 MobiDBLite consensus disorder prediction 12 32 - -
Pumo6g02959 996 MobiDBLite consensus disorder prediction 940 963 - -
Pumo6g02959 996 Gene3D - 338 436 - -
Pumo6g02959 996 Gene3D - 597 643 - -
Pumo6g02959 996 Pfam Myb-like DNA-binding domain 339 432 IPR001005 -
Pumo6g02959 996 Pfam Myb-like DNA-binding domain 597 638 IPR001005 -
Pumo6g02959 996 Pfam Myb-like DNA-binding domain 544 587 IPR001005 -
Pumo6g02959 996 ProSiteProfiles Myb-like domain profile. 590 640 IPR001005 -
Pumo6g02959 996 Gene3D - 437 487 - -
Pumo6g02959 996 MobiDBLite consensus disorder prediction 944 963 - -
Pumo6g02959 996 ProSiteProfiles Myb-like domain profile. 435 487 IPR001005 -
Pumo6g02959 996 ProSiteProfiles Myb-like domain profile. 543 589 IPR001005 -
Pumo6g02959 996 Pfam Myb-like DNA-binding domain 443 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02959 Pumo-Chr6 70251618 70258200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02959 215 688 MYB-Related Transcription Factor Family AT3G18100 53.593 2.22e-172 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pumo6g02959 Myb_DNA-binding 9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02959 K09422 - gmx:100818474 1618.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02959 6 70251618 70258200 Pumo6g02959 6 70251618 70258200 ECH