Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02958 ATGTGGATGGTGGGTTGTGAAGGTGGTGAGTTCAACATGGTTGAACATTCATTCAATACTGGAAGGAAACTCAGGCCTCTCATGCCAAGGCCAATAACTTCTCTTAACAATGCACCAACAACAACCACTCCTGGTTTATCTCACATCCATGGGAATGATTTCCTTTCACAATATCATTACCACCATCTTGTGGCAGAACAAAACAAGAGAGAGTTCAATGGTGCAGCACCGGTTGTGGTGAGCTCAAGGTGGAATCCAACCCCAGAGCAACTAGGAGCCCTTGAAGAGTTGTATAGAAGAGGAACAAGGACACCATCTGCTGAGCAAATCCAACACATCACTGCACAGCTTAGAAGGTTTGGTAACATTGAAGGGAAGAATGTGTTCTATTGGTTTCAGAATCACAAAGCCAGGGAAAGGCAAAAGCGCCGCCGCCAAATGGAATCAGATGCTGAAACTCCAGAGAAGAAAGATTTACTAGCTGCAAGTAGGACAGTGTTTGAAGTTGAACGGACCAAGAACTGGACACCCTCAACAAACTACAGTACTATTGCAGAGGAATCTGTTTCAACACAAAGGACAGCAAAAGCAGTGGCTGCAGAGAGTAGAACAGATGGATGGCTCCTATTCGATGAAGGGGAATTACAACAAAGAAGGAACCTTTTTGAAAGGAATGCAACGTGGCATGTGATGCAGTTACCTTGTCCTTCTCCTTCTGCACCTGTCACCCACCTCATAAACACCCCTCCTAATGCCTCTGCAGCTACTAGTATGGCCACTACTACAACCACAGTAACAACAAGAAAAATGGACCCAAACCTCATTAAGACACATGATCTCAGCTTTTTTATTTCACCCCAGAGAGAAAACAGTGTTATCTACTTAAGTAGTAGCAGTAGTACTAGTGAAGATGATAACTGTGTGGAGTCTCAAACCCTTCAACTTTTCCCATTGAGGAGTGGTGATGGCAGCTGTGACAACATCAACGATAATGAGACAGAGATATCAGCTTCAGCAATGAATGCCAACAACTTGACCCCAAGCCAGTTTTTTGAGTTCCTTCCTATGAAGGAGTAA 1077 0.441 MWMVGCEGGEFNMVEHSFNTGRKLRPLMPRPITSLNNAPTTTTPGLSHIHGNDFLSQYHYHHLVAEQNKREFNGAAPVVVSSRWNPTPEQLGALEELYRRGTRTPSAEQIQHITAQLRRFGNIEGKNVFYWFQNHKARERQKRRRQMESDAETPEKKDLLAASRTVFEVERTKNWTPSTNYSTIAEESVSTQRTAKAVAAESRTDGWLLFDEGELQQRRNLFERNATWHVMQLPCPSPSAPVTHLINTPPNASAATSMATTTTTVTTRKMDPNLIKTHDLSFFISPQRENSVIYLSSSSSTSEDDNCVESQTLQLFPLRSGDGSCDNINDNETEISASAMNANNLTPSQFFEFLPMKE 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02958 358 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 66 353 IPR044555 GO:0003700|GO:0099402
Pumo6g02958 358 SUPERFAMILY Homeodomain-like 82 147 IPR009057 -
Pumo6g02958 358 SMART HOX_1 79 146 IPR001356 GO:0003677
Pumo6g02958 358 CDD homeodomain 83 143 IPR001356 GO:0003677
Pumo6g02958 358 FunFam WUSCHEL-related homeobox 4 81 148 - -
Pumo6g02958 358 Gene3D - 80 142 - -
Pumo6g02958 358 ProSiteProfiles 'Homeobox' domain profile. 87 142 IPR001356 GO:0003677
Pumo6g02958 358 Pfam Homeodomain 82 141 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02958 Pumo-Chr6 70148907 70151773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02958 1 357 Wox Gene Family AT3G18010 38.363 6.06e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Pumo6g02958 Homeodomain 1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02958 - - gmx:100819541 628.632