Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02952 ATGGAGCCGTCCTCGATCTCTCCACTGCCAGCTCCGCCTGCGACCGCCGTTCCCTTCCCCGTCGAACCCAACGACCACCTTCCACAACCCATTCCCGAACCACCTTCCAACCACCCACCCTATGCTGAGATGATATACACAGCAATCGAGGCGCTGAAGGAGAAGGAGGGTTCGAGCAAGAGGGCGATAGCGAAGTATATTGAGCAAGTGTACAAGGGGCAGCTTCCACCGAATCACTCCGACTTGTTGACTCAGCACTTGACTCGCTTGAAGAACACCGGAATGCTCCAAATGGTTAAGAAATCCTATGCGCTCCCTAGATCTGTGCCTCTTCCTGGACCTGGACCTGCACCGCACCAGCAGCCGTGGCACCCGGTGCCTCTGCTTCGCCGAGCCCTAGGCCCAGAGGCCGGCCTCGCAAGGCCCAGACTCCCGTCCATAACTTGCCTCAGCCAGTCCAGCCGCTGCCTCAGGATGCTGCTGCTGCTGCCAACGTTCAGGTTCAGCAGAATGCTGAGCCCGTCTGGGCCGCGCTTGGGCTTGCAGACGAGCCTGTGCAAGCAGAAGGCAGCAAGAAGCGGGGACGTCCGAAGAAGAGTGCCACCCCGGGAGCGGGCCCGGCCAAGAGAGGCCGTCCTCCCGGCTCTGGGAAAAGGCCGGGCCGTCCTCCCAAGGCTAAGCCTGCCACAATGGATGTCTCCTGCTTCTACTGGGCCGAAGAAACGCCCAGGTCGCCCGCCCAAGAATCAGACGCAACCAACTCCAATTCCTTTTGCTCCTGCTGTAGCCGCCACTGCCGTGGGTACTGAGCCCGTGGTGGCAGCCGAAGCTGTGCCAGTTGGTGCTGAGGCTGTTCTCGGACCTAGAGCCCGTGGACGGCCAAAGAAGTATGCTGACGAAATTGTTGCTGCAGGACGAGGCAGGGGACGTGGGCGAGGCCGGGGACGTGGAAGAGGGAGAGGACGTGGTGGATTCCCTGTACAGCCCAGGAAACCAGGGGCAAGGCCCGTGGGTCGCCCAAAGAAGGGGTCAACTTCTGCTAGTACTTCTCAAAATGCTGCTAATGAAGATCTCAGGAGGAAGCTTGAACACTTCCAAACAAAAGTCAAGGAATCTCTTGCAGTGCTTAAGCCTCACTTTAACCATGAAAGTCCAGTCACTGCAATTGCTGCTATTCAAGAGTTGGAAGTACTGGGAACTATGGACCTCAATGCACCACTAAGGGATGAAACACTTCCACAGCAAGAGGAGCTGCCACCACCACAGCCACCAGTGCAGCAACAGCAGCAGCAGCAGCAGCCACCACAGCAACAGCTTCCACCACCACAGCAGCAGCAGCAGCAGCCACCACAGCAGCACCTAGCACCACAACAACTGCCACCACAGCCATTATTTCAGCAAACATTTCCTGCGTTTCATCTGCCGCAGTTCCACCATCACCAGCCACCGCTGCAGTTCCAGCAACAGCAGCAGCCACAGCCGCCACAGCTATTCCAGCACCAGGCACAGCCTCCGCAACACCAACAGTTTCATCCTTAG 1539 0.5828 MEPSSISPLPAPPATAVPFPVEPNDHLPQPIPEPPSNHPPYAEMIYTAIEALKEKEGSSKRAIAKYIEQVYKGQLPPNHSDLLTQHLTRLKNTGMLQMVKKSYALPRSVPLPGPGPAPHQQPWHPVPLLRRALGPEAGLARPRLPSITCLSQSSRCLRMLLLLPTFRFSRMLSPSGPRLGLQTSLCKQKAARSGDVRRRVPPRERARPREAVLPALGKGRAVLPRLSLPQWMSPASTGPKKRPGRPPKNQTQPTPIPFAPAVAATAVGTEPVVAAEAVPVGAEAVLGPRARGRPKKYADEIVAAGRGRGRGRGRGRGRGRGRGGFPVQPRKPGARPVGRPKKGSTSASTSQNAANEDLRRKLEHFQTKVKESLAVLKPHFNHESPVTAIAAIQELEVLGTMDLNAPLRDETLPQQEELPPPQPPVQQQQQQQQPPQQQLPPPQQQQQQPPQQHLAPQQLPPQPLFQQTFPAFHLPQFHHHQPPLQFQQQQQPQPPQLFQHQAQPPQHQQFHP 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02952 512 FunFam Histone H1.2 34 114 - -
Pumo6g02952 512 MobiDBLite consensus disorder prediction 224 256 - -
Pumo6g02952 512 MobiDBLite consensus disorder prediction 448 465 - -
Pumo6g02952 512 MobiDBLite consensus disorder prediction 413 512 - -
Pumo6g02952 512 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 37 107 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo6g02952 512 PRINTS AT-hook-like domain signature 240 250 IPR017956 GO:0003677
Pumo6g02952 512 PRINTS AT-hook-like domain signature 286 297 IPR017956 GO:0003677
Pumo6g02952 512 PRINTS AT-hook-like domain signature 332 342 IPR017956 GO:0003677
Pumo6g02952 512 MobiDBLite consensus disorder prediction 1 39 - -
Pumo6g02952 512 SMART AT_hook_2 334 346 IPR017956 GO:0003677
Pumo6g02952 512 SMART AT_hook_2 240 252 IPR017956 GO:0003677
Pumo6g02952 512 SMART AT_hook_2 288 300 IPR017956 GO:0003677
Pumo6g02952 512 CDD H15 35 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo6g02952 512 MobiDBLite consensus disorder prediction 291 356 - -
Pumo6g02952 512 Pfam linker histone H1 and H5 family 38 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pumo6g02952 512 MobiDBLite consensus disorder prediction 191 209 - -
Pumo6g02952 512 MobiDBLite consensus disorder prediction 291 307 - -
Pumo6g02952 512 SUPERFAMILY "Winged helix" DNA-binding domain 34 117 IPR036390 -
Pumo6g02952 512 PANTHER HISTONE H1 25 344 - -
Pumo6g02952 512 Gene3D - 34 111 IPR036388 -
Pumo6g02952 512 MobiDBLite consensus disorder prediction 481 512 - -
Pumo6g02952 512 MobiDBLite consensus disorder prediction 177 209 - -
Pumo6g02952 512 SMART h15plus2 35 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02952 Pumo-Chr6 70038079 70044823 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02952 44 111 Single Myb Histone (SMH) Gene Family AT1G49950 41.176 4.35e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02952 - - gmx:100788215 397.512