LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo6g02951	ATGGGTGGTGTAGGAGGAACACTTGTGGATGGCATTCGTCGCATCTTCCATCGTTGCAATTCTATTAACTCTCACATTCACCATCACAACAACAACAAAAACAAAAAGAAAAACAAGAACAAGAACAACAACAACGTTAACAGCAACATTGTCTTTGTGAGACATTTGCGTGCCCAGTTGGCCAACGTTCCCACTCAGCATACCCCTTCCTTCAACCTTCTCAAAGTCCCCAAACGCTCCCACTTCAAATCTTCTTCCATGGATCGTAACAAAAAGGGTGCACCGGAGGTAGAGTTTTTTACCGAGTATGGAGAGGCAAGTAGGTATGAGATCCATGAAGTGATTGGAAAAGGGAGTTATGGTGTTGTGTGTTCTGCCGTTGACACTCATACTGGGGAAAAAGTTGCAATTAAGAAAATCAATGATGTTTTTGAGCATGTGTCGGATGCCACACGGATCCTAAGAGAAATTAAACTCCTTCGTTTGCTCCGACATCCTGATGTAGTTGAAATTAAGCATATAATGCTTCCTCCCTCACGACGAGAGTTCAGGGATGTCTATGTTGTGTTTGAGTTGATGGAGTCTGACCTTCATCAAGTAATCAAGGCAAATGATGATCTTACCCCGGAGCACTACCAATTTTTCTTGTACCAACTTCTTCGAGGCCTCAAATTTATACACACAGCAAATGTGTTTCATCGTGACTTGAAGCCAAAAAATATCCTAGCTAATGCTGATTGCAAACTAAAAATATGTGATTTCGGACTTGCTCGAGTTTCATTTAATGAGGCCCCGTCAGCTATATTCTGGACCGACTATGTTGCAACTCGGTGGTATCGTGCACCTGAACTATGTGGTTCTTTTTTCTCAAAATATACCCCCGCAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTCAGTGGGAAGCCATTGTTTCCTGGAAAAAATGTAGTGCACCAATTGGATCTCATAACTGACCTGCTTGGTACTCCTCCTGCTGAAACCGTTTCTAGGATTCGAAATGAGAAGGCTAGAAGGTACCTTGCTAGCATGCGGAAAAAGCAACCTATTCCATTCTCCAAAAAATTTCCAAATGCAGATCCATTGGGTCTTAATTTGCTGGAGCGATTACTTGCATTTGATCCTAAAGATCGTCCAGCAGCTGAAGAGGCACTAAGAGATCCTTATTTCCATGGTTTGTCAAATGCGGACCGTGAACCATCCACTCAACCAATTTCAAAGCTTGAGTTTGAGTTTGAGAGGAGAAAATTGGCCAAAGATGATGTTAGAGAGTTGATTTATCGAGAGATTTTAGAGTATCATCCTCAGATGCTCGAAGAATATCTTCGTGGTGGAGAACAAACAAGCTTCATGTATCCAAGTGGGGTTGACCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGGCAAAGGTGAACGAAGCACTCCGTTGTTGAGGCAGCACGCCTCCTTACCTAGAGAACGAGTTCCTGCTCCCAAGGATGAAAATAATCAAAACAATGATGAAAATCCAACTGGAGCAAATCTTCAGAGTCCTCCAGGGTCTGATGTGACAGATTCTGGAAACCCAGATGCACAAAATGGACACTCCAGGCCAAACTGCAGTGCGCGTAGCCTGTTGAAGAGTGCCAGCATTAGCGGTTCAAAGTGTATAGATGTGAAACAAAGTAAAGATTCAGAGGAGGAGCCACTTACAGAGGTCAATGATGAGACTCTGGATGAGTTGACACAGAAAGTTGCTTCCCTCCATGCTTAG	1791	0.4316	MGGVGGTLVDGIRRIFHRCNSINSHIHHHNNNKNKKKNKNKNNNNVNSNIVFVRHLRAQLANVPTQHTPSFNLLKVPKRSHFKSSSMDRNKKGAPEVEFFTEYGEASRYEIHEVIGKGSYGVVCSAVDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDVVEIKHIMLPPSRREFRDVYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKFIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNEAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMLSGKPLFPGKNVVHQLDLITDLLGTPPAETVSRIRNEKARRYLASMRKKQPIPFSKKFPNADPLGLNLLERLLAFDPKDRPAAEEALRDPYFHGLSNADREPSTQPISKLEFEFERRKLAKDDVRELIYREILEYHPQMLEEYLRGGEQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLLRQHASLPRERVPAPKDENNQNNDENPTGANLQSPPGSDVTDSGNPDAQNGHSRPNCSARSLLKSASISGSKCIDVKQSKDSEEEPLTEVNDETLDELTQKVASLHA	596

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo6g02951	596	MobiDBLite	consensus disorder prediction	23	45	-	-
	Pumo6g02951	596	MobiDBLite	consensus disorder prediction	23	40	-	-
	Pumo6g02951	596	MobiDBLite	consensus disorder prediction	508	564	-	-
	Pumo6g02951	596	SMART	serkin_6	109	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo6g02951	596	FunFam	Mitogen-activated protein kinase	195	423	-	-
	Pumo6g02951	596	Pfam	Protein kinase domain	109	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo6g02951	596	ProSiteProfiles	Protein kinase domain profile.	109	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pumo6g02951	596	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE	100	450	-	-
	Pumo6g02951	596	MobiDBLite	consensus disorder prediction	479	584	-	-
	Pumo6g02951	596	FunFam	Mitogen-activated protein kinase	424	446	-	-
	Pumo6g02951	596	Gene3D	Phosphorylase Kinase; domain 1	124	446	-	-
	Pumo6g02951	596	Gene3D	Transferase(Phosphotransferase) domain 1	195	423	-	-
	Pumo6g02951	596	ProSitePatterns	MAP kinase signature.	144	247	IPR003527	GO:0004707\|GO:0005524\|GO:0006468
	Pumo6g02951	596	SUPERFAMILY	Protein kinase-like (PK-like)	104	405	IPR011009	-
	Pumo6g02951	596	FunFam	Mitogen-activated protein kinase	98	203	-	-
	Pumo6g02951	596	CDD	STKc_TDY_MAPK	108	445	-	-
	Pumo6g02951	596	ProSitePatterns	Protein kinases ATP-binding region signature.	115	139	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo6g02951	Pumo-Chr6	70004401	70009550	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo6g02951	94	596	MAP Kinase Gene Family	AT3G18040	80.943	0.0	829

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_MAPK	Pumo6g02951		Pkinase	1.7e-66	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo6g02951	-		-	gmx:100776784	1067.76