Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02950 ATGGGTGTCTCAGGGAAGTGGATTAAGGCATTGGTGGGTCGAAAGAAATCAGAAAAGACTGAGTCGTTAGAGAAGGATGGAAATAAGGTTAGCAAGTTTCACCATCAGGGAAAGCCTGCTGTCGAATTTGATAATGGTAATCTTCCAAATGAATTTGATAACGATGCTACTCAACCTATTGGAGATGACAATGGCCACACAAACATTGATGCCCATTATTCACCTTCTACTTCACAACAAGATCATGATGCTGCTCATAATCATCAAATGAGGGAGGAATGGGCTGCAATACGCATTCAAACAGCATTTCGAGGATTTCTGGCCAGAAGAGCACTACGAGCTTTGAAAGGAGTGGTAAGGCTTCAGGCCCTTGTAAGAGGCTATGCAGTGAGAAAACAAGCCGCAATAACACTCCGTTGTATGCAAGCTTTGGTGAGGGTTCAGGCTCGTGTTCGGGCAAGGCATGTTCGCATGGCATTGGAAACTCAAGCAACACAACAGAAACTTAAGCAAAAGGCTGCAAACAAAGTTCAAGTTCGAGAAATAGAAGAAGGATGGTGTGATAGCGTAGGATCTGTTGAAGAAATTCAATCTAAAATATTGAAGAGACAGGAGGCTGCAGCAAAACGGGAGAGAGCCATGGCATATGCTCTAGCTCATCAGTGGCAGGCAGGATCAAGACAGCAGCCTGTTTCCTCAGGATTTGAACCAGATAAAAATAGCTGGGGTTGGAATTGGTTGGAAAGATGGATGGCTGTTCGTCCTTGGGAGAATCGTTTTGTTGACATTAATCTGAGGGATGGAGTAACAGTACATGAAAATGGAGCTAAGGGTGATCAAAATGGAACAACACATCAATCTAGACCTGCTAACAAGAAACCATTGTCATCAAACCCTCATCTGTACCCTGTAAGTCAGAGAACTGGTCCCATTCTTTCCGATGGCTGTGATTCTTCATCTACACTTAGTAAGTCAGCAGGTTTGCTAGAATCATCAGACACACAGCCTGTGAAGCCAAATTCTAAGGCAAATGTTGAAAATGTTGTTGAAGAAGCTAATTCAAAACTTGGAATTGAGTCAAGATCTCATTCAAATCCGAAGGAGAGAACATCACAGGCAGATAAGCAGGCAAAAAAACGATTATCTCTGCCTAACAATGGTGAGTTTATTCTCTTTCTGTTCATTTTATTATTTCCTGTACACTGGCGTCTCACAGCTGCTTCAGGGAGTTGGAAAAATTATCAGGTAAACTATAGTATACATAGACTAACTAACCTAAATCTTTGCATTATACTTCAGCTAGTTTGA 1308 0.4197 MGVSGKWIKALVGRKKSEKTESLEKDGNKVSKFHHQGKPAVEFDNGNLPNEFDNDATQPIGDDNGHTNIDAHYSPSTSQQDHDAAHNHQMREEWAAIRIQTAFRGFLARRALRALKGVVRLQALVRGYAVRKQAAITLRCMQALVRVQARVRARHVRMALETQATQQKLKQKAANKVQVREIEEGWCDSVGSVEEIQSKILKRQEAAAKRERAMAYALAHQWQAGSRQQPVSSGFEPDKNSWGWNWLERWMAVRPWENRFVDINLRDGVTVHENGAKGDQNGTTHQSRPANKKPLSSNPHLYPVSQRTGPILSDGCDSSSTLSKSAGLLESSDTQPVKPNSKANVENVVEEANSKLGIESRSHSNPKERTSQADKQAKKRLSLPNNGEFILFLFILLFPVHWRLTAASGSWKNYQVNYSIHRLTNLNLCIILQLV 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02950 435 SMART iq_5 114 135 IPR000048 GO:0005515
Pumo6g02950 435 SMART iq_5 91 113 IPR000048 GO:0005515
Pumo6g02950 435 MobiDBLite consensus disorder prediction 60 83 - -
Pumo6g02950 435 MobiDBLite consensus disorder prediction 352 379 - -
Pumo6g02950 435 MobiDBLite consensus disorder prediction 272 324 - -
Pumo6g02950 435 ProSiteProfiles IQ motif profile. 116 143 IPR000048 GO:0005515
Pumo6g02950 435 MobiDBLite consensus disorder prediction 361 376 - -
Pumo6g02950 435 MobiDBLite consensus disorder prediction 276 304 - -
Pumo6g02950 435 Gene3D - 93 134 - -
Pumo6g02950 435 FunFam IQ-domain 11 91 142 - -
Pumo6g02950 435 Pfam IQ calmodulin-binding motif 116 133 IPR000048 GO:0005515
Pumo6g02950 435 Pfam IQ calmodulin-binding motif 94 113 IPR000048 GO:0005515
Pumo6g02950 435 MobiDBLite consensus disorder prediction 14 39 - -
Pumo6g02950 435 ProSiteProfiles IQ motif profile. 92 120 IPR000048 GO:0005515
Pumo6g02950 435 PANTHER IQ-DOMAIN 5-RELATED 1 385 - -
Pumo6g02950 435 MobiDBLite consensus disorder prediction 14 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02950 Pumo-Chr6 69941811 69947145 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02950 1 390 IQD Protein Family AT3G22190 55.949 1.25e-118 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02950 - - gmx:100787148 665.611