Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02946 ATGAGTTTGGGTGTGTTGGTTATTGTACAGAAAGTATTATATTATACTTATTATAAAAGAAAAGAAATGGAGGAGTCAGATTCAACACCAAAGTCTCTGATGGAGAACCTGCTTGGCCTTTTGAGGGTTCGCGTGAAGCGTGGTGTCAACCTTGCCGTTCGTGATGTCCGAAGCAGCGACCCTTATGTTGTCATCAAGATGTACAACCAGAAACTAAAGACTCGTGTGATTAAAAAGGATGTGAATCCTGAGTGGAATGAAGACCTTACTCTTTCTGTTATAAATCCGAATCACCCAGTTAAACTGACTGTGTATGACCATGACACTTTTAGCAAAGATGACAAAATGGGAGACGCAGAATTTGACATCTTGCCCTTTATAGAAGCCTTGAAGATGAACTTAACTGGCCTTCCAAATGGTACTATAATCACAAGAATACAACCAAGCAGGCATAATTGCCTGGCAGATGAGAGCTGCATAACTTACAACAATGGCAAGGTTGTCCAAGACATGATCCTTAGATTGCAAAATGTGGAATGTGGTGAAGTGGAAATCCAATTGCAGTGGATTGATCTTCCTGGTTCTAAGGGTTTATGA 597 0.4054 MSLGVLVIVQKVLYYTYYKRKEMEESDSTPKSLMENLLGLLRVRVKRGVNLAVRDVRSSDPYVVIKMYNQKLKTRVIKKDVNPEWNEDLTLSVINPNHPVKLTVYDHDTFSKDDKMGDAEFDILPFIEALKMNLTGLPNGTIITRIQPSRHNCLADESCITYNNGKVVQDMILRLQNVECGEVEIQLQWIDLPGSKGL 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02946 198 ProSiteProfiles C2 domain profile. 22 136 IPR000008 -
Pumo6g02946 198 Pfam C2 domain 39 123 IPR000008 -
Pumo6g02946 198 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 35 124 IPR035892 -
Pumo6g02946 198 Gene3D C2 domain 34 196 IPR035892 -
Pumo6g02946 198 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 36 196 IPR044562 -
Pumo6g02946 198 SMART C2_3c 40 135 IPR000008 -
Pumo6g02946 198 CDD C2_ArfGAP 38 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02946 Pumo-Chr6 69884825 69887915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02946 71 198 C2H2 Transcription Factor Family AT1G70790 63.077 1.33e-55 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02946 - - gmx:100810504 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00127 1 2237692 2240000 Pumo6g02946 6 69884825 69887915 ECH
Pumo6g02946 6 69884825 69887915 Pumo6g02946 6 69884825 69887915 ECH
Pumo6g02946 6 69884825 69887915 Pumo6g02946 6 69884825 69887915 PCT