Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02935 ATGGAGAGGGAATTTTTTGGCTTGAGTTCCAAAAATGGTGCATGGACTACTATGAAAGATGATGCTGCTAACAAACCAAGAGACCCAGTGAGGAATTCAGGAATGCAGTGGTCATTCCCAAACAAGGTTTCAGCCCTTCCTCAATTCCTGTCCTTCAAGACCAATCAGGAAGACAGGCCTAGAAAGACTATTCTTGAGCCACTAGCTTCATCTGGATATATGACCATTTCAACTAAAGATGCTTTTGACTCTAACCAGAAACCATTCTTGGGTGTGACCCAGAGAAATTTGTCCATAGGGAAGCATGCTGCAGGAAACAAACAAGGAATGGCAGTTTATCCTCTGCAATGTTGTGATGCACAGTCAGCATGCCTTCAGGAAGAAAGAATATTTTCAGTTTCCAACCAATCAAATCAAGTGAGTCCTGTTCTTCAATCTAATCTTGCTACTACCGGACTGAACATGGTCAATTCAGTCATAAAACCACAACCTCTTGGTTCCAAATCCTCTGGCACACCTGTATCTGCTCTTCCATCAATAGGTTCCATTGTTGGATCTACTGACTTAAGGAATTGTTCCAAATCCTCTGGCATGCCTACTCAGCTGACCATTTTCTATGCTGGTTCCGTATGTGTTTATGATGACATAACTCCCGAGAAGGCCAAGGCTATCATGTTAATGGCTGGAAATGGGTCTACTCCAACTCAGAAAATGGAACTTTCCACAGCTAAATTGCAGCCAGCAATCTCTATTCCCTCCAAAGATGATGGTTTCATTATAAGCCAATCCTATCCCCGCTCAACCCTGCCAAGTCCTCTTCCCACTGACCTCTCATGTCAATTCTCAGCCAGGAGGAGGATCTTCTAG 867 0.436 MEREFFGLSSKNGAWTTMKDDAANKPRDPVRNSGMQWSFPNKVSALPQFLSFKTNQEDRPRKTILEPLASSGYMTISTKDAFDSNQKPFLGVTQRNLSIGKHAAGNKQGMAVYPLQCCDAQSACLQEERIFSVSNQSNQVSPVLQSNLATTGLNMVNSVIKPQPLGSKSSGTPVSALPSIGSIVGSTDLRNCSKSSGMPTQLTIFYAGSVCVYDDITPEKAKAIMLMAGNGSTPTQKMELSTAKLQPAISIPSKDDGFIISQSYPRSTLPSPLPTDLSCQFSARRRIF 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02935 288 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 132 257 IPR040390 -
Pumo6g02935 288 ProSiteProfiles Tify domain profile. 195 230 IPR010399 -
Pumo6g02935 288 Pfam tify domain 199 229 IPR010399 -
Pumo6g02935 288 SMART tify_2 195 230 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02935 Pumo-Chr6 69706996 69713729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02935 35 233 Tify Gene Family AT3G17860 45.455 2.06e-37 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Pumo6g02935 tify 3.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02935 K13464 - gmx:100807288 469.544