Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02931 ATGCCTTATGCTGAGTTGGGTAAAGTTGATGGAAAAGTGGGGGTTGGTGCATTGTTCTTCAAGGTCAGTATAGATGGTGCTCCCTATTTAAGGAAAGTAGACTTGAAGAATTACTCTACATATCAAGAATTATCTTCTGCTCTAGAAAAGATGTTCAGCTATTTTACTATATGTCAATGTGGATCTCATGGAATTCTCGGCAGGGAGATGCTGAATGAAACCAAGCCGAAGGACCTTTTTCATGGATTAGAATATGTTCTTACATATGAGGACAAAGATGGCGATTGGATGCTTGTGGGTGATGTTCCCTGGGACAACAACACCTTATATTACAACTTCAAGGTCAACATCACAGCCAACCCCATCAACAACGTCATGGTGTACTATGCGAAGATTGAAGCAATAGCTTCGTACAAAGATATTGATTTTGGCTGGGTGAGCTTATCACCCTTTGATCAGCATGGCCACAACAAGATCACAACCTTCCCTCAAGCAGTGTTTCAAGGGCAGAGTGTGATTAGGCTCCAACCTAAACAACTTGACTCCGTGGCAGCTTATTCGTCTGCATCTACTGCACAATCTGCACCCTCATTTTCATGTTCATGCTATCCTGTGATCATCTTCTGGATAATAATCTCTCCCTCAAATGTCAAGTTCCATGTAACTGATGCCTCCCTCACACAATTCAACCTCACAACCAACAACACCTTGTACTACAACTTGAAGGTCAACATCACAGTTAGAAACCCCAACAAAAACATCATAGTCTACTATAGGGAGATCAAAGCAATAGCTTGGTACAAAGATAATGATTTTGATAGGGTGAGCTTAACACCCTTTGACCAAGGCCACAAGAATACCACCTTCCTTCAAGCAGTGTTTGAAGGGCAGAGTGTGATTAAGCTCAAACCTAAACAACTTGGTGAGTATAAAGACGAGACAAGTGTTGGGATTTACAATGACTTGGCTGTGGATTTGGATCTTAGAATCAAAGCCAAGTATGGAAGGTTCAAGAGTAGTGGTTTCAATCCACCCTTGGTTCAGTGTCGCCGCTTGAGGGTTCCTTTTATTTCTAATGGCAAATCAACACCTCCTTTTAGTGTCAAGAAATGCAGAACTACTGGTTCTTTCTTTATAGATCGTGATGCTGATTCAGGAGCACGCTGA 1167 0.4182 MPYAELGKVDGKVGVGALFFKVSIDGAPYLRKVDLKNYSTYQELSSALEKMFSYFTICQCGSHGILGREMLNETKPKDLFHGLEYVLTYEDKDGDWMLVGDVPWDNNTLYYNFKVNITANPINNVMVYYAKIEAIASYKDIDFGWVSLSPFDQHGHNKITTFPQAVFQGQSVIRLQPKQLDSVAAYSSASTAQSAPSFSCSCYPVIIFWIIISPSNVKFHVTDASLTQFNLTTNNTLYYNLKVNITVRNPNKNIIVYYREIKAIAWYKDNDFDRVSLTPFDQGHKNTTFLQAVFEGQSVIKLKPKQLGEYKDETSVGIYNDLAVDLDLRIKAKYGRFKSSGFNPPLVQCRRLRVPFISNGKSTPPFSVKKCRTTGSFFIDRDADSGAR 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02931 388 PANTHER OS05G0367900 PROTEIN 202 355 IPR044839 GO:0098542
Pumo6g02931 388 Pfam Late embryogenesis abundant protein 244 337 IPR004864 -
Pumo6g02931 388 SUPERFAMILY CAD & PB1 domains 17 105 - -
Pumo6g02931 388 Pfam AUX/IAA family 16 105 IPR033389 -
Pumo6g02931 388 ProSiteProfiles PB1 domain profile. 17 120 IPR000270 GO:0005515
Pumo6g02931 388 Gene3D - 13 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02931 Pumo-Chr6 69628866 69638463 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02931 211 384 SNARE and Associated Proteins AT1G32270 30.286 1.28e-20 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pumo6g02931 LEA_2 1.8e-06 CL0159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02931 K14484 - gmx:100783747 305.449