Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02919 ATGGAAAGGGATAAGGGGAGCAGGAGTGGGAGTCAGGTGGAGAAGGGATTGGGAGTGGGAGTTAGAGACTTTAGTTTGCCTCAATTGGTGCAAGAGATTAAGGAAAAGCTATTGAAAGGTACTGTCGAGTGCATGATTTGCTATGAGATGGTCCAGAGGTCTGCACCGGTTTGGTCTTGCTCCAGCTGCTACTCTATCTTTCACCTGAACTGCATCAAGAAGTGGGCTAGGGCACCCATCTCAAGTGATTTGTCCTTGTCCGTGGAGAAGAATCAAGAGCTTAATTGGCGGTGTCCTGGTTGTCAGTCTGTGAAATTTGCCTCTTCAAAGGAGATTAGGTATGTTTGCTTTTGTGGGAAGAGGATAGACCCTCCATCCGATTTGTATCTGACACCACATTCGTGTGGAGAACCATGTGGAAAGCCTCTTGAGAGGGAGGTGTTGGTTGCTGGAGGGAATAGGGATGATCTTTGCCCTCATGTTTGTGTCTTGCAATGCCATCCAGGACCATGCCCTCCGTGCAAAGCATTTGCTCCTCCACGGTTGTGCCCTTGTGGGAAGAAAAATATTACCACCCGTTGCTCTGATCGGCAGTCTGTTCTTACCTGTGGACAGTGCTGTGATAAACTTCTTGAATGTGGGCGCCATTGCTGTGAACGCATTTGTCATGTGGGACCATGTGATCCTTGTAAGGTTCTGATCAGTGCCTCTTGCTTTTGTAGTAAAAAGACAGAGGTTGTTCCTTGTGGGGACATGTCTGTGAAGGGTGAAATTGAAGCAGAAGGTGGGGTTTTTTCTTGTGGTTCCTATTGTCTAAAGAAACTTGGTTGTGGTAATCATGTCTGTAGTGAGATTTGTCATCCAGGCAGCTGCGTGGAATGTGAATTTTTACCTAGCCGGGTTAAGACATGCTGTTGTGGGAAAACAAGGTTGGAGAATGAACGCCAGAGTTGTTTGGATCTGATACCTACCTGCTCTAAAGTATGTGGCAAGCTGCTTCATTGTGGCATGCATAGCTGTAAAGAGGCATGCCATGTTGGGGATTGTCCACCTTGTTTGATTCAAGTTTCACAGAAGTGCCGTTGTGGCTCAACTTCCCGAACTGTGGAGTGCTATAAGACTATGATGGAGAATGAGAAATTTTTGTGTGAAAAGTCTTGTGGGATAAAAAAGAATTGTGGAAGGCATCGATGTAGTGAAAGGTGTTGTCCATTTTCTAATCCAAGTAATTATAATAATTCTAGTGGGGATTGGGTTCCTCACTTTTGTTCCATGCCATGTGGAAAGAAGCTAAGGTGTGGCCAGCATGTGTGTGAATGTCTGTGTCACAGTGGTCATTGTCCACCTTGTTTCCAAACAATCTTTAATGAATTGACTTGTGCTTGTGGTAGGACTTCAAGACCTCCTCCTCTACCTTGTGGTACACCGCCTCCCTCATGTCAGCTTCCATGCTCAGTTCCTCAGCCATGTGGCCATTCAGGCTCACACAGTTGCCATTTTGGAGACTGTCCTCCTTGTTCAGTGCCTGTAGCAAAAGAATGTATTGGTGGGCATGTAGTTCTTAGAAACATACCTTGTGGTTCGAAGGATATTAGATGCAATCATCCCTGTGGGAAGACCAGGCAGTGTGGTTTACATGCATGTGGTAGAACATGTCACCCCCCACCTTGTGATAATCTATCTGGTGCTGTGCAAGGTTTCAAAGCACCATGTGGCCAAACATGTGGTGCTCCAAGAAGAAGCTGCCAGCACACATGTATGGCTCCTTGTCACCCTTCATCTCCATGCCCAGATATAAGATGTGAATTCCCTGTTACAATCACTTGCTCTTGTGGCCGTATAACTGCAAATGTTCCTTGTGATGCTGGTGGTAGCAGTAGCAATTATAATGCTGATGCCATACATGAAGTTTCCATTATTCAAACATTGCCTGTACCACTTCAACCAGTTGATGCAAATGGCAAGAAAGTTCCCCTAGGACAAAGAAAGCTGATATGTGATGATGAATGTGCTAAGCTGGAACGCAAAAGGGTTCTCGCGGATGCTTTTGATATCACTGCTCCAAATCTGGACTCTCTCCATTTTGGTGATAACTCTCTTTCTTCTGAATTGCTTTCTGATTTTTTCAGGCGTGAGCCAAAATGGGTTTTAGCTGTTGAGGAGAGATGCAAAATTTTAGTACTTGGCAAGAGTAGAGGAACTACTCATGGTTTAAAAGTCCACATCTTTTGTCCCATGCTGAAGGAAAAAAGAGATGCAGTTAGGTTGATTGCTGATAGATGGAAGCTTGCAGTCAATGCTGCCGGCTGGGAGCCAAAGCGATTTATTGTAATTTCTGTTACCCCTAAAATCAAAGGCCCCAGCTCGTGTGATAGGGGTTAA 2382 0.4526 MERDKGSRSGSQVEKGLGVGVRDFSLPQLVQEIKEKLLKGTVECMICYEMVQRSAPVWSCSSCYSIFHLNCIKKWARAPISSDLSLSVEKNQELNWRCPGCQSVKFASSKEIRYVCFCGKRIDPPSDLYLTPHSCGEPCGKPLEREVLVAGGNRDDLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKNITTRCSDRQSVLTCGQCCDKLLECGRHCCERICHVGPCDPCKVLISASCFCSKKTEVVPCGDMSVKGEIEAEGGVFSCGSYCLKKLGCGNHVCSEICHPGSCVECEFLPSRVKTCCCGKTRLENERQSCLDLIPTCSKVCGKLLHCGMHSCKEACHVGDCPPCLIQVSQKCRCGSTSRTVECYKTMMENEKFLCEKSCGIKKNCGRHRCSERCCPFSNPSNYNNSSGDWVPHFCSMPCGKKLRCGQHVCECLCHSGHCPPCFQTIFNELTCACGRTSRPPPLPCGTPPPSCQLPCSVPQPCGHSGSHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNHPCGKTRQCGLHACGRTCHPPPCDNLSGAVQGFKAPCGQTCGAPRRSCQHTCMAPCHPSSPCPDIRCEFPVTITCSCGRITANVPCDAGGSSSNYNADAIHEVSIIQTLPVPLQPVDANGKKVPLGQRKLICDDECAKLERKRVLADAFDITAPNLDSLHFGDNSLSSELLSDFFRREPKWVLAVEERCKILVLGKSRGTTHGLKVHIFCPMLKEKRDAVRLIADRWKLAVNAAGWEPKRFIVISVTPKIKGPSSCDRG 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02919 793 SMART znfxneu3 490 508 IPR000967 GO:0005634|GO:0008270
Pumo6g02919 793 SMART znfxneu3 213 232 IPR000967 GO:0005634|GO:0008270
Pumo6g02919 793 SMART znfxneu3 582 603 IPR000967 GO:0005634|GO:0008270
Pumo6g02919 793 SMART znfxneu3 277 296 IPR000967 GO:0005634|GO:0008270
Pumo6g02919 793 SMART znfxneu3 543 573 IPR000967 GO:0005634|GO:0008270
Pumo6g02919 793 SMART znfxneu3 158 176 IPR000967 GO:0005634|GO:0008270
Pumo6g02919 793 SMART znfxneu3 335 354 IPR000967 GO:0005634|GO:0008270
Pumo6g02919 793 SMART znfxneu3 433 452 IPR000967 GO:0005634|GO:0008270
Pumo6g02919 793 Pfam NF-X1 type zinc finger 277 294 IPR000967 GO:0005634|GO:0008270
Pumo6g02919 793 Pfam NF-X1 type zinc finger 433 450 IPR000967 GO:0005634|GO:0008270
Pumo6g02919 793 Pfam NF-X1 type zinc finger 335 352 IPR000967 GO:0005634|GO:0008270
Pumo6g02919 793 Pfam NF-X1 type zinc finger 393 404 IPR000967 GO:0005634|GO:0008270
Pumo6g02919 793 Pfam NF-X1 type zinc finger 160 175 IPR000967 GO:0005634|GO:0008270
Pumo6g02919 793 Pfam NF-X1 type zinc finger 490 507 IPR000967 GO:0005634|GO:0008270
Pumo6g02919 793 Pfam NF-X1 type zinc finger 213 231 IPR000967 GO:0005634|GO:0008270
Pumo6g02919 793 Pfam NF-X1 type zinc finger 575 600 IPR000967 GO:0005634|GO:0008270
Pumo6g02919 793 Pfam NF-X1 type zinc finger 543 558 IPR000967 GO:0005634|GO:0008270
Pumo6g02919 793 ProSitePatterns Zinc finger PHD-type signature. 44 101 IPR019786 -
Pumo6g02919 793 CDD NF-X1-zinc-finger 203 251 - -
Pumo6g02919 793 CDD NF-X1-zinc-finger 325 373 - -
Pumo6g02919 793 CDD NF-X1-zinc-finger 423 467 - -
Pumo6g02919 793 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 23 785 IPR034078 GO:0003700
Pumo6g02919 793 SUPERFAMILY RING/U-box 34 104 - -
Pumo6g02919 793 ProSiteProfiles Zinc finger PHD-type profile. 41 104 IPR019787 -
Pumo6g02919 793 CDD NF-X1-zinc-finger 267 312 - -
Pumo6g02919 793 ProSiteProfiles Zinc finger RING-type profile. 44 102 IPR001841 -
Pumo6g02919 793 CDD RING-CH-C4HC3_NFX1-like 43 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02919 Pumo-Chr6 69482365 69484746 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Pumo6g02919 zf-NF-X1 25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02919 K12236 - gmx:100789059 1605.88