Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02902 ATGCCCCAGAATAAGATTTTCCAAGACCAACAATCACCGAATCCGATTCCTGATCTTTCCCTTCACATTAGCCTCCCAAACAGTGCTCCTTCTTCAATTTGCATTGAAGGGGATTCACCCTTTGATGATACATGGCCACAACAAGCATATGATGCTGCTGAAGGCCTCAAATATTCACACAGTGATGGTTCAATCAAAGGTAGTAGCCCTCATCACACAGACACACAACTTTCCTTAGCCAATTACCCCACAAGCACTGCTTCTACTCCCTCTGAGGCTGAAAGCACCTTGAGGAAGAGAAACTTTGTTAGACTTTGTCATGGGGTTTCTGAGGGTCAAATAAGACTCATCAATGGAATCCCTCTCTACAGTAATAACCTTTCTTCTTTGGACAACACTAGTGGTAGTAGTACTATTCCCTCAATAGAGAGAAACCCCACCAATAAGTTTTCCTTTTCTTCTCTATATGCACTTCCACACCCTCCTTATTCTGCCAATTCAACTCCTAGTTATGGTAATAATGGTGTTGTTGGGGGTGTAGCAGTAGAACCAATCTCAAGGTTTCATGACATAACCATGGAGAGGAGTACTCTAAGACCCCAACAGTTTCAGTACTTTGAGTTTGATTACCCTCATCAGCAGCATCAGTTTGGGAATAGTAATAATATTGGAGCTTCTGATTTTTCAAATGGATTTGTGAGATCAAGAATGTTCTCAAGGCAGCAAAGTAACAAGAGGAACATGAGGGCTCCAAGAATGCGTTGGACTAGTTCTCTTCATAATCGCTTTGTTCATGCTGTTGAACTACTTGGTGGCCATGAAAGGGCTACTCCTAAGTCAGTTTTGGAACTAATGGATGTCAAAGATCTAACACTAGCTCATGTCAAGAGTCATTTGCAGATGTATCGGACTGTTAAGAACACTGACAAACCTGCAGCTTCTTCAGATGGGGATGAGGATTTCATGTCCCTAACAGTACCAAATAATCAAAATAAGAATTTTTTACCCAATCAGAGAGGACCTCCAAATGCATCCATAGATCATGAAATGGGCTACACTTCCAACAATCTATGGGTTAATTCTTCTTCCAGTAGAGGAGCACGGATACAAGCTAATTCCCGTGATTTGGATGAGCTTAGTCCACAAGAAAGCCTATCATCTCAGCATACTGGGAAACTTTCTGAGGGTAGCAACTACATACAAACAAGAAGCTTCAACAAGGATCAAAATCCAAGCTTGGAGTTCACCTTAGGGAGATCAAATTGGCACAACAATGAACATGCCTAA 1287 0.4165 MPQNKIFQDQQSPNPIPDLSLHISLPNSAPSSICIEGDSPFDDTWPQQAYDAAEGLKYSHSDGSIKGSSPHHTDTQLSLANYPTSTASTPSEAESTLRKRNFVRLCHGVSEGQIRLINGIPLYSNNLSSLDNTSGSSTIPSIERNPTNKFSFSSLYALPHPPYSANSTPSYGNNGVVGGVAVEPISRFHDITMERSTLRPQQFQYFEFDYPHQQHQFGNSNNIGASDFSNGFVRSRMFSRQQSNKRNMRAPRMRWTSSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAASSDGDEDFMSLTVPNNQNKNFLPNQRGPPNASIDHEMGYTSNNLWVNSSSSRGARIQANSRDLDELSPQESLSSQHTGKLSEGSNYIQTRSFNKDQNPSLEFTLGRSNWHNNEHA 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02902 428 MobiDBLite consensus disorder prediction 62 96 - -
Pumo6g02902 428 MobiDBLite consensus disorder prediction 306 349 - -
Pumo6g02902 428 FunFam Myb family transcription factor 249 307 - -
Pumo6g02902 428 MobiDBLite consensus disorder prediction 1 22 - -
Pumo6g02902 428 MobiDBLite consensus disorder prediction 369 428 - -
Pumo6g02902 428 SUPERFAMILY Homeodomain-like 248 305 IPR009057 -
Pumo6g02902 428 Gene3D - 250 307 - -
Pumo6g02902 428 MobiDBLite consensus disorder prediction 321 340 - -
Pumo6g02902 428 NCBIfam myb-like DNA-binding domain, SHAQKYF class 251 304 IPR006447 GO:0003677
Pumo6g02902 428 MobiDBLite consensus disorder prediction 58 96 - -
Pumo6g02902 428 MobiDBLite consensus disorder prediction 369 422 - -
Pumo6g02902 428 Pfam Myb-like DNA-binding domain 252 303 IPR001005 -
Pumo6g02902 428 MobiDBLite consensus disorder prediction 1 18 - -
Pumo6g02902 428 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 17 427 IPR044847 GO:0000976|GO:0006355|GO:0010158
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02902 Pumo-Chr6 69201077 69212729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02902 208 331 G2-like Transcription Factor Family AT5G42630 57.258 3.76e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pumo6g02902 Myb_DNA-binding 1.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02902 - - gmx:100796973 679.093