Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02894 ATGGAAAACTCATCATCATCCTCAAACTATCTCTACCGAGAGTGCCTCCGCAACCATGCAGCCAGCCTCGGCAGCTACGCCACCGACGGCTGCGGGGAGTTCACCCTCGACGTGGACAACGTCTCGTCCCCCTCCCTCCAGTGCGCAGCCTGCGGCTGCCACCGCAACTTCCACCGCAAGGTCACGTGCCCTGCGGTGGAAGGGCTCGTGACTGGAGGGAGCGGGGACATGATGGAGTACTCCGGAGGTGGCGGTGGCGACGGCGGAAGAATGGAGATGGGAGAGAGGAGCAGCAAGAAGAGGTTCAGGACCAAATTCAGTGCTGAGCAGAAGGAGAAGATGCTGGGGTTTGCGGAGAAGCTGGGGTGGAAGCTGCAGAGGAAAGAGGTGGATGATGAGATTGAGAGGTTTTGTAAAAGTGTGGGAGTCACTAGACAGGTTTTCAAGGTCTGGATGCATAACCATAAGAACAACTCTAACTCTTCTAATTCTTCTGCTAATGTCTCTTCTCTCACTCAGTGA 522 0.5556 MENSSSSSNYLYRECLRNHAASLGSYATDGCGEFTLDVDNVSSPSLQCAACGCHRNFHRKVTCPAVEGLVTGGSGDMMEYSGGGGGDGGRMEMGERSSKKRFRTKFSAEQKEKMLGFAEKLGWKLQRKEVDDEIERFCKSVGVTRQVFKVWMHNHKNNSNSSNSSANVSSLTQ 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02894 173 NCBIfam homeobox domain, ZF-HD class 99 157 IPR006455 -
Pumo6g02894 173 MobiDBLite consensus disorder prediction 80 101 - -
Pumo6g02894 173 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 7 158 - -
Pumo6g02894 173 FunFam Zinc-finger homeodomain protein 2 88 161 - -
Pumo6g02894 173 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 12 61 IPR006456 -
Pumo6g02894 173 Gene3D - 84 163 - -
Pumo6g02894 173 Pfam ZF-HD protein dimerisation region 10 62 IPR006456 -
Pumo6g02894 173 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 12 60 IPR006456 -
Pumo6g02894 173 SUPERFAMILY Homeodomain-like 88 158 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02894 Pumo-Chr6 69104860 69105730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02894 4 156 ZF-HD Transcription Factor Family AT2G18350 42.473 9.93e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Pumo6g02894 ZF-HD_dimer 3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02894 - - gmx:547765 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02894 6 69104860 69105730 Pumo6g02894 6 69104860 69105730 PCT