Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02892 ATGGATGGTGATAATGGTCTTAACATACGCAATTGGGGTTACTATGAACCCGCTACGTCGTTTAAGAGCCACCTGGGGCTGCAGCTGATGTCATCCATGCCGGAAAAACCTTTAATCGGAGGCCGGAATGCCGCAGTTTTATCTGGCAATAATGGGGCATTTCACCATAGGGACATTGGTGGTGTGCCCCAAGCTACATACCCTATGGAATACATGAGGGATGCATGGATTAGTCAGAGAGACAAATATATGAATATGATACCTACAAATCATAACTACGGTGGTATTCCGGAGACATCTTCAGCACATCAAATTCAAATGATTCCACCACCGGAATTGCCAAAGGAAGAAAGGCCAGTGGAAGAGGCACCTGTTGTTGAGAAGGCAAATGGCGGCACTCGTAAGAAAAGACAGGGCCCCAAGGTGCCCAAATCTCCCAAGGCTAAGAAGCCCAAGAGGGGGCCTCGCGCGCCAAAGGATGAGAATGCTCCCTCAGTTCAACGTGCAAGGGTTCCAAAGAAAACTACTGAAATTGTAATAAACGGAATTGATATGGATATTTCTAGTATTCCGATTCCTGTTTGTTCATGCACTGGAGCGCCTCAACAGTGTTATAGATGGGGCTCTGGCGGTTGGCAGTCTGCATGTTGCACGACAGGCATGTCAGTGTATCCTTTGCCTATGAGTACTAAGCGGCGTGGTGCTAGGATAGCTGGAAGGAAAATGAGTATAGGAGCATTTAAGAAAGTGTTAGAGAAACTCGCAGCCGAGGGTTATAACTTTTCTAATCCGATTGATTTGAGGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTCACTATTAGGTAG 852 0.4636 MDGDNGLNIRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGGRNAAVLSGNNGAFHHRDIGGVPQATYPMEYMRDAWISQRDKYMNMIPTNHNYGGIPETSSAHQIQMIPPPELPKEERPVEEAPVVEKANGGTRKKRQGPKVPKSPKAKKPKRGPRAPKDENAPSVQRARVPKKTTEIVINGIDMDISSIPIPVCSCTGAPQQCYRWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02892 283 MobiDBLite consensus disorder prediction 109 173 - -
Pumo6g02892 283 PANTHER - 1 283 IPR010409 -
Pumo6g02892 283 Pfam GAGA binding protein-like family 1 283 IPR010409 -
Pumo6g02892 283 MobiDBLite consensus disorder prediction 114 134 - -
Pumo6g02892 283 Coils Coil 280 283 - -
Pumo6g02892 283 MobiDBLite consensus disorder prediction 135 153 - -
Pumo6g02892 283 SMART GAGA_bind_2 1 283 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02892 Pumo-Chr6 69082818 69083669 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02892 1 283 BBR or BPC Transcription factor family AT2G01930 51.515 1.85e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Pumo6g02892 GAGA_bind 1.2e-112 No_clan