Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02891 ATGTTAGCCAATAACTTATCTCCATCGTCAGTTCCCACTTCTGAGCCTTTTCCCTGCACTGAAAATGGCACTGCCACCAATAAAAGGAAGAGAAGGCCCGCAGGAACACCAGATCCAGATGCAGAAGTGGTGTCCCTCTCGCCGAAGACTTTGCTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTTCAGATGCATAGGAGGAGGCACAAGGTGCCATGGAAGCTATTGAAGAGGGAGACACCAGTGGTGAGGAAGAGAGTGTTTGTGTGTCCTGAGCCAACTTGCTTGCACCATGACCCATGCCATGCCTTGGGTGATCTTGTTGGGATTAAGAAGCATTTCAGGAGGAAGCACAGCAATCACAAGCAATGGGTCTGTGAAAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACGTGTGGCACCCGGGGCCACTCTTGTGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGTTTCATTGAGCACCAAGATGCTTGCAACTTGGGGAGGCTCAGGCCTGAGTCTCAACCTCTTCAACCATCTGCATGCCTTTCTAGAACAGCTTCAAGCCCAAGCCCTTCAAGTGAAACCAATTTCAGCACAGCTCCATGGCCAACAAGAATGATAATACCAAAGCCATCAGAACCACCCACAATTTTCATGAATAACCCTACTGCTGCTATCACCACTGCTGAAACCTCATCCAAGAGCAACAAGCTCCACCCCAACTTGGATCTTCAACTCTCCACCCCAACCAACAACAACAACAACAACACATCAAATGTTGCAAACCCCATTGATGCTGCAATATCCACATCACTATCACCTAAGAGGGATCATCATCATGAGAACCATTCAACCCATTTGCAACTCTCAATTGGGTCATCAGATGTGAGTGAGAAAAACGAATCAAACAGGAATTCATCAGAGAAGAGCAGCAACAGCAACAATGAGAAGCAGTCCAACATGGCCTTGTTGAGGGTTCAAGAGCAAGCGAGGGAACACTTGAGGATAGCCATGGCAGAGAAAGCATATGCTGAGGAAGCAAGGAAACAAGCCAAGAGGCAGATTGAGCTTGCGGAGCAAGAGTTCACAAACGCCAAGAGGATAAGACAACAAGCACAGGCGGAACTCGACAAGGCCTATGCCTTGAAAGAACATGCAATGAAGCAAATCAACTCCACCATGCTCCAAATCACTTGCCACGGTTGCAAGCAACAGTTCCAAGCTCGAAATGTAACCCCCGACGAGAACTCCTTGGTGTTGAGCTACGTGTCTTCTGCTATAACCACAGAAGGAGGAGGAGAAGTAGAAAACGATAATGCAAAAGATCATGGCAAAGACAACAACTAA 1401 0.4789 MLANNLSPSSVPTSEPFPCTENGTATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNLGRLRPESQPLQPSACLSRTASSPSPSSETNFSTAPWPTRMIIPKPSEPPTIFMNNPTAAITTAETSSKSNKLHPNLDLQLSTPTNNNNNNTSNVANPIDAAISTSLSPKRDHHHENHSTHLQLSIGSSDVSEKNESNRNSSEKSSNSNNEKQSNMALLRVQEQAREHLRIAMAEKAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQINSTMLQITCHGCKQQFQARNVTPDENSLVLSYVSSAITTEGGGEVENDNAKDHGKDNN 466
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02891 466 Coils Coil 352 407 - -
Pumo6g02891 466 MobiDBLite consensus disorder prediction 194 220 - -
Pumo6g02891 466 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
Pumo6g02891 466 MobiDBLite consensus disorder prediction 1 44 - -
Pumo6g02891 466 MobiDBLite consensus disorder prediction 193 337 - -
Pumo6g02891 466 Gene3D Classic Zinc Finger 35 97 - -
Pumo6g02891 466 MobiDBLite consensus disorder prediction 235 287 - -
Pumo6g02891 466 MobiDBLite consensus disorder prediction 1 24 - -
Pumo6g02891 466 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Pumo6g02891 466 MobiDBLite consensus disorder prediction 304 337 - -
Pumo6g02891 466 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Pumo6g02891 466 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Pumo6g02891 466 SMART c2h2final6 134 161 IPR013087 -
Pumo6g02891 466 SMART c2h2final6 98 128 IPR013087 -
Pumo6g02891 466 SMART c2h2final6 57 79 IPR013087 -
Pumo6g02891 466 Gene3D Classic Zinc Finger 119 194 - -
Pumo6g02891 466 FunFam protein indeterminate-domain 12-like 36 104 - -
Pumo6g02891 466 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 403 IPR031140 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pumo6g02891 Pumo-Chr6 69056565 69060252 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02891 20 455 C2H2 Transcription Factor Family AT2G01940 57.143 8.08e-154 442
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo6g02891 zf-C2H2 0.0044 CL0361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02891 K25871 - gmx:100800187 843.573
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02891 6 69056565 69060252 Pumo6g02891 6 69056565 69060252 ECH
Pumo6g02891 6 69056565 69060252 Pumo6g02891 6 69056565 69060252 PCT