Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pumo6g02891 | ATGTTAGCCAATAACTTATCTCCATCGTCAGTTCCCACTTCTGAGCCTTTTCCCTGCACTGAAAATGGCACTGCCACCAATAAAAGGAAGAGAAGGCCCGCAGGAACACCAGATCCAGATGCAGAAGTGGTGTCCCTCTCGCCGAAGACTTTGCTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTTCAGATGCATAGGAGGAGGCACAAGGTGCCATGGAAGCTATTGAAGAGGGAGACACCAGTGGTGAGGAAGAGAGTGTTTGTGTGTCCTGAGCCAACTTGCTTGCACCATGACCCATGCCATGCCTTGGGTGATCTTGTTGGGATTAAGAAGCATTTCAGGAGGAAGCACAGCAATCACAAGCAATGGGTCTGTGAAAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACGTGTGGCACCCGGGGCCACTCTTGTGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGTTTCATTGAGCACCAAGATGCTTGCAACTTGGGGAGGCTCAGGCCTGAGTCTCAACCTCTTCAACCATCTGCATGCCTTTCTAGAACAGCTTCAAGCCCAAGCCCTTCAAGTGAAACCAATTTCAGCACAGCTCCATGGCCAACAAGAATGATAATACCAAAGCCATCAGAACCACCCACAATTTTCATGAATAACCCTACTGCTGCTATCACCACTGCTGAAACCTCATCCAAGAGCAACAAGCTCCACCCCAACTTGGATCTTCAACTCTCCACCCCAACCAACAACAACAACAACAACACATCAAATGTTGCAAACCCCATTGATGCTGCAATATCCACATCACTATCACCTAAGAGGGATCATCATCATGAGAACCATTCAACCCATTTGCAACTCTCAATTGGGTCATCAGATGTGAGTGAGAAAAACGAATCAAACAGGAATTCATCAGAGAAGAGCAGCAACAGCAACAATGAGAAGCAGTCCAACATGGCCTTGTTGAGGGTTCAAGAGCAAGCGAGGGAACACTTGAGGATAGCCATGGCAGAGAAAGCATATGCTGAGGAAGCAAGGAAACAAGCCAAGAGGCAGATTGAGCTTGCGGAGCAAGAGTTCACAAACGCCAAGAGGATAAGACAACAAGCACAGGCGGAACTCGACAAGGCCTATGCCTTGAAAGAACATGCAATGAAGCAAATCAACTCCACCATGCTCCAAATCACTTGCCACGGTTGCAAGCAACAGTTCCAAGCTCGAAATGTAACCCCCGACGAGAACTCCTTGGTGTTGAGCTACGTGTCTTCTGCTATAACCACAGAAGGAGGAGGAGAAGTAGAAAACGATAATGCAAAAGATCATGGCAAAGACAACAACTAA | 1401 | 0.4789 | MLANNLSPSSVPTSEPFPCTENGTATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNLGRLRPESQPLQPSACLSRTASSPSPSSETNFSTAPWPTRMIIPKPSEPPTIFMNNPTAAITTAETSSKSNKLHPNLDLQLSTPTNNNNNNTSNVANPIDAAISTSLSPKRDHHHENHSTHLQLSIGSSDVSEKNESNRNSSEKSSNSNNEKQSNMALLRVQEQAREHLRIAMAEKAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQINSTMLQITCHGCKQQFQARNVTPDENSLVLSYVSSAITTEGGGEVENDNAKDHGKDNN | 466 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pumo6g02891 | 466 | Coils | Coil | 352 | 407 | - | - | |
Pumo6g02891 | 466 | MobiDBLite | consensus disorder prediction | 194 | 220 | - | - | |
Pumo6g02891 | 466 | SUPERFAMILY | beta-beta-alpha zinc fingers | 54 | 80 | IPR036236 | - | |
Pumo6g02891 | 466 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Pumo6g02891 | 466 | MobiDBLite | consensus disorder prediction | 193 | 337 | - | - | |
Pumo6g02891 | 466 | Gene3D | Classic Zinc Finger | 35 | 97 | - | - | |
Pumo6g02891 | 466 | MobiDBLite | consensus disorder prediction | 235 | 287 | - | - | |
Pumo6g02891 | 466 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Pumo6g02891 | 466 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 57 | 79 | IPR013087 | - | |
Pumo6g02891 | 466 | MobiDBLite | consensus disorder prediction | 304 | 337 | - | - | |
Pumo6g02891 | 466 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 59 | 79 | IPR013087 | - | |
Pumo6g02891 | 466 | Pfam | Zinc finger, C2H2 type | 57 | 79 | IPR013087 | - | |
Pumo6g02891 | 466 | SMART | c2h2final6 | 134 | 161 | IPR013087 | - | |
Pumo6g02891 | 466 | SMART | c2h2final6 | 98 | 128 | IPR013087 | - | |
Pumo6g02891 | 466 | SMART | c2h2final6 | 57 | 79 | IPR013087 | - | |
Pumo6g02891 | 466 | Gene3D | Classic Zinc Finger | 119 | 194 | - | - | |
Pumo6g02891 | 466 | FunFam | protein indeterminate-domain 12-like | 36 | 104 | - | - | |
Pumo6g02891 | 466 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 20 | 403 | IPR031140 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pumo6g02891 | Pumo-Chr6 | 69056565 | 69060252 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pumo6g02891 | 20 | 455 | C2H2 Transcription Factor Family | AT2G01940 | 57.143 | 8.08e-154 | 442 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pumo6g02891 | zf-C2H2 | 0.0044 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pumo6g02891 | K25871 | - | gmx:100800187 | 843.573 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pumo6g02891 | 6 | 69056565 | 69060252 | Pumo6g02891 | 6 | 69056565 | 69060252 | ECH | |
Pumo6g02891 | 6 | 69056565 | 69060252 | Pumo6g02891 | 6 | 69056565 | 69060252 | PCT |