Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02875 ATGTGCAGTAGAGGCCATTGGAGGCCAGCTGAGGATGAGAAGCTTCGAGAATTGGTGGAACGCTATGGACCTCATAATTGGAACGCCATAGCTGAGAAGCTCCGAGGAAGATCAGGGAAAAGCTGTAGGTTGAGATGGTTCAATCAACTGGACCCAAGAATAAACAGAAGTCCTTTCACAGAGGAAGAAGAAGAGCGTCTTCTAGCCTTCTCACCGGATTCATGGCAATAG 231 0.4805 MCSRGHWRPAEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLAFSPDSWQ 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02875 76 Gene3D - 4 55 - -
Pumo6g02875 76 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Pumo6g02875 76 FunFam MYB transcription factor 4 55 - -
Pumo6g02875 76 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Pumo6g02875 76 SMART sant 3 52 IPR001005 -
Pumo6g02875 76 SUPERFAMILY Homeodomain-like 3 64 IPR009057 -
Pumo6g02875 76 Pfam Myb-like DNA-binding domain 7 67 - -
Pumo6g02875 76 CDD SANT 7 48 IPR001005 -
Pumo6g02875 76 PANTHER MYB PROTEIN-RELATED 4 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02875 Pumo-Chr6 68763500 68764636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02875 1 69 MYB Transcription Factor Family AT1G17950 92.754 1.44e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pumo6g02875 Myb_DNA-bind_6 7.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02875 K09422 - gmx:100811746 151.369