Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02873 ATGAATGCTTCGACGAGGAAAAAGGTTAAAAGGAAGTGTAAGATAAGAGGCTACAACCTCAAAGTTGGTGCTCTTAACGAGATCCTCTCCTTCATCTCTCACTTTGAAAGCGACGAAGATGGAGCCATTGATCTCCTCCTTGACGAGCTCGAAACATCTATGAAATCCACCATAATCGACAAGGAACTGGTGCACCGCGTGGTGGTGAACCTGTTGAAAGCCATGGCTGTGGATGAAAGTTCCGACGACTCCGCTGCCAGTTCTGCCTTTCGCTTCATCGATGCATTCCTCATTCCAAAATATAAATATGACACTATCAGAAAGCAATTCTACCAGCATACAAGCAGCCTAAGTATTCTCGGGGAAGCATCAGCACAATTGGCTTTGTACAGGGATAGATTTCTTTTGTTGTCCCAGAGGCTCTCTCGTGACCAGCATTTTTCAAAGCCTGCTTTTGAATCTGAATTTTCGCATTTTGGAAGCTGTGAGCAATACAAGATAACTACAGGACTCTTTTCAGAGAACACTATCGTTGTGGCTGAAGGGGAGATGCTTGTCGAGGGTATTTTTCAGGTCTTAACATGTGGATTTCCTCCATTGGAGGATAGAGATAAGTCACTTGAATTCCTTGCAGGGCATGACTTTTTTGATGGTGGTATTTTTACCAAAGAGGAAACTATCAGACTAGGAGAGATGGAGAAAAGAGCAGTCAATGACATGTTTGTTATACTTTCTGATATTTGGCTAGACAATGAAGAGGTAATTTGCAATCTAGAGACTGTTCTGGATGGTTTTGAGAGTGTGGAAGTAGTACCTTCATTATTTGTTTTCATGGGAAACTTCTCTTCTAAGCCATGTAACCGTTCATTTCATTCTTATTGGAGCCTCAGAATGCAGTTTGGTAAGCTAGGTGAAATGATTACTGCCCATCCACGGCTGAAAGAGCACAGCAAATTTCTGATTATTCCAGGTCCTGATGATCCACGTATTGACATTGTCCTTCAACAACTCTTCCTAGGTGTGCTCTTTGAAATTATTTTACTGAGGAGCTCCAAAAGCACATCCCTCATGTCATATTTTCAAGCAACCCCTGCAGGATTGTATGGAACATTTTTATCTAACTGTACAACTTGTGAACCCATAGGGTTGGCGCAGTGGTGTAAGACCCCATTGCGTTCACACGTGGGGGAACGATTTAGCGGGAGAACCCGTGTTCGATTTTCTCAGTGTGCAAAATTCTCTTGGGCCAGCAGCAGTCACGCACCGCGAGCTGGATTAGTCTCTGTCCTAATGGGTTGGAAGACACCCGTGATAGTCTTGGGTGACAGAAGTCCGCAGAATGCATTCAAGTACGCAGGAATCACTTGCTTTAATACTGGTTCCTTCTCAATTGACAGCACATTTTTAGCATACCGTCCTTGCTCTCAGGAAGTTGAATTGTCAGCCTTGTAA 1452 0.4353 MNASTRKKVKRKCKIRGYNLKVGALNEILSFISHFESDEDGAIDLLLDELETSMKSTIIDKELVHRVVVNLLKAMAVDESSDDSAASSAFRFIDAFLIPKYKYDTIRKQFYQHTSSLSILGEASAQLALYRDRFLLLSQRLSRDQHFSKPAFESEFSHFGSCEQYKITTGLFSENTIVVAEGEMLVEGIFQVLTCGFPPLEDRDKSLEFLAGHDFFDGGIFTKEETIRLGEMEKRAVNDMFVILSDIWLDNEEVICNLETVLDGFESVEVVPSLFVFMGNFSSKPCNRSFHSYWSLRMQFGKLGEMITAHPRLKEHSKFLIIPGPDDPRIDIVLQQLFLGVLFEIILLRSSKSTSLMSYFQATPAGLYGTFLSNCTTCEPIGLAQWCKTPLRSHVGERFSGRTRVRFSQCAKFSWASSSHAPRAGLVSVLMGWKTPVIVLGDRSPQNAFKYAGITCFNTGSFSIDSTFLAYRPCSQEVELSAL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02873 483 Pfam DNA polymerase alpha/epsilon subunit B 241 329 IPR007185 GO:0003677|GO:0006260
Pumo6g02873 483 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 437 483 IPR016266 GO:0003677|GO:0006261|GO:0008622
Pumo6g02873 483 PIRSF DNA_pol_epsilon_2 1 167 IPR016266 GO:0003677|GO:0006261|GO:0008622
Pumo6g02873 483 PIRSF DNA_pol_epsilon_2 161 345 IPR016266 GO:0003677|GO:0006261|GO:0008622
Pumo6g02873 483 PIRSF DNA_pol_epsilon_2 431 483 IPR016266 GO:0003677|GO:0006261|GO:0008622
Pumo6g02873 483 Gene3D - 2 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02873 Pumo-Chr6 68733661 68740379 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02873 16 339 Core DNA Replication Machinery Family AT5G22110 55.586 3.05e-130 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02873 K02325 - cave:132185936 486.878