Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02872 ATGAATGCTTCAACGAGGAAAAAGGTTCAAAGGAAGTGTAAGATAAGAGGCTACAACCTCAAAGTCGATGCTCTCGACGAGATCCTCTCCTTCGCCTCTCGCTTCGAAGGCCCCGACGAGGACGAAGCCATCGATCTCCTCCTCGACGAGCTCGAAAAATCTCTGAAATCCACCATAATCGACAAGGAACTGGTGCAGCGCGTGGTGAGCCTGCTGCTGGAAGCCGAGGAGACCGTGGAGGAAAGCTCCGACGCCGCTGCTGCCTCCACCTCCGCCATTCGCGTCGTGGATGCGTTCCTCATCCCGAAGTATAAATACGACTCTATCAGAAAGCAATTCTACGAGCACACAGGCAGCTTATCTATTCATGGAGAAGCATCAGCAAAAGCAGCTCTGTACAGGGATAGGTTTCTGTTGTTGTCCCAGAGGCTCTCTCGTGACCAGCATTTTTCAAAGCCTGCTTTTGAATCTGAATTTTCACATTTTGGAAGCTGTGAGATATCTCCCATTCAATCTCTGGTTGGGCAAACAGGTAGAAGATGGGTAATGGGAGTAATATCTCAGCTGGAGGATGGTCATTACTATTTGGAAGACCTTACAGCTGCAGTTAAAATCAACTTGTCCAATGCAAAGATAACTACAGGACTCTTTTCAGAGAACACTATAGTTGTGGCTGAAGGGGAGATGCTTGTGGAGGGTGTTTTTCAGGTCTTAACATGTGGATTTCCTCCATTGGAGGATAGAGATAAGTCAGTTACACTACTTGCAGGGCATGACTTTTTTGGCGGGGGTACTTTTACCAAAGAGGAAACTATTAGACTGGCAGAGATGGAGAAAAGAGCGGTAAATGACATGTTTGTTATACTTTCTGATATTTGGCTAGACAATGAAGAGGCTTTGAGAAAGCTAGAGACTGTTCTGGATGGCTTTGAGAGTGTGGAAGTGGTTCCTTCCTTATTTGTTTTCATGGGAAATTTCTCTTCTAAGCCATGTAACCTTTCATTTCATTCTTATTCGAGCCTCAGAATGCAGTTTGGTAAGCTGGGGGAAATGATTGCCGCCCATACACGGCTAAAAGAGCACAGTAAATTTCTGTTTATTCCAGGTCCTGATGATGCAGGTCCTTCAACGGGTCTTCCTAGATGCGCTTTACCAAAATATTTAACTGAAGAGCTCCAAAAGCACATTCCCAATGCCATATTTTCAAGCAACCCCTGCAGGGTCAAATTTTATACCCAAGAAATTGTATTTTTCCGCCAGGATATGCTGTATAGAATGCGCCGCTCATGTTTGATGCCTCCTTCTACAGAAGAGACTGATGATCATTTTCAACATCTTGTTGCTACCATAACCCATCAGAGTCATCTCTGTCCACTCCCTCTAACTGTACAACCCATCATTTGGAATTATGACCATTGTCTTTATCTTTATCCAACTCCACACACGATAGTCCTGGGTGACAGAAGTCAGCAGAAGGCATTCAAGTACACAGGAATCACTTGTTTTAATACAGGTTCCTTTGCAATTGACAGCACGTTTGTGGCATATCGTCCCTGCTCTCAGGAAGTTGAATTGTCAGCCTTGTAG 1587 0.4486 MNASTRKKVQRKCKIRGYNLKVDALDEILSFASRFEGPDEDEAIDLLLDELEKSLKSTIIDKELVQRVVSLLLEAEETVEESSDAAAASTSAIRVVDAFLIPKYKYDSIRKQFYEHTGSLSIHGEASAKAALYRDRFLLLSQRLSRDQHFSKPAFESEFSHFGSCEISPIQSLVGQTGRRWVMGVISQLEDGHYYLEDLTAAVKINLSNAKITTGLFSENTIVVAEGEMLVEGVFQVLTCGFPPLEDRDKSVTLLAGHDFFGGGTFTKEETIRLAEMEKRAVNDMFVILSDIWLDNEEALRKLETVLDGFESVEVVPSLFVFMGNFSSKPCNLSFHSYSSLRMQFGKLGEMIAAHTRLKEHSKFLFIPGPDDAGPSTGLPRCALPKYLTEELQKHIPNAIFSSNPCRVKFYTQEIVFFRQDMLYRMRRSCLMPPSTEETDDHFQHLVATITHQSHLCPLPLTVQPIIWNYDHCLYLYPTPHTIVLGDRSQQKAFKYTGITCFNTGSFAIDSTFVAYRPCSQEVELSAL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02872 528 Gene3D - 2 70 - -
Pumo6g02872 528 Pfam DNA polymerase alpha/epsilon subunit B 286 491 IPR007185 GO:0003677|GO:0006260
Pumo6g02872 528 PIRSF DNA_pol_epsilon_2 1 528 IPR016266 GO:0003677|GO:0006261|GO:0008622
Pumo6g02872 528 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 1 528 IPR016266 GO:0003677|GO:0006261|GO:0008622
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02872 Pumo-Chr6 68724080 68729698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02872 16 485 Core DNA Replication Machinery Family AT5G22110 71.277 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02872 K02325 - gmx:100784116 941.028