Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02868 ATGGCTAATTTTGAGAAAGATGAGGTGCCAATTTTCTCAGATATTCATCCCAAACTATCAAATGAACCTTTTGATTCTAAATTCCCAAGGCGTGTACCTAGGACTCGAAGTGTATCAATTTCTATTCCCGCGACACTCACGGAGCCATATGAAAGAGAGACTAATCTTGTGGGATACACTGGCCCTCTACGGAGTCAGAGAAAAACTCCATTTAATCAGATGAGTGGTCCATTGTATGTTACTAATAAACCTGGAAACCTTTTCCGGCAGAATAGAGTGGCACCAGAGTACCAAACAGCAGAAAGTAAGACAGAAAATTTTCCTTCATGCTGTGGCATGGGTGAAAATGATTTGCAGAACAACTATGCTGGCAAGAATGAACATTTAGTTAGGTCCGGTCCACTGGGAATGTGTAATGATCCATATTGTACAACTTGCCCAACTTACTTCAAGGCTACTCAACAAATGAACTCAAAAGCTTCGGGTATATTCAATCCTAAGTTTCGCAATACCCTCTATGGGGATGCCAGGGATTGGGCAAGAAGACTCTTTGCTTTCTTGATTCCACTTGTTCCTAGAGTTATGAATCCTCATAATAAACTTGTACAACAATGGAATAAATTTTTTGCAATTTGTTGCTTGGTGGCAATTTTTGTGGATCCATTATTTTTCTTCTTGCTCTCTGTGCAGAAGGAAAATAAATGTATTGTTATACACAGGACTATGACAAATATGCTTGTTGTACTTAGAAGCATGAATGATTTCATACACTTCCTAAACATTGTTCTTCAGTTTAGGTTGGCTTATGTGGCTCCTGAGTCTAGGGTGGTTGGCGCTGGGGAGTTAGTTGACCATCCTAAGAAAATAGCTCTTCACTACCTTCGGACATCTTTTATTATTGACTTATTTGTTGTACTTCCACTTCCTCAGATATTGATATTGTGTGTCCTACCAAAGCACTTGGGGACGGGGTCATCAGGAGCAAACTATGCAAATAATTTTTTGCGTATTGTGATCCTTGTTCAGTATATTCCCAGATTGTGTAGGTTTCTTCCTATGCTAATTTCTCCAACTGGATTCATATTTGAGTCTCCATGGGCAAGTTTCTTTATAAATCTTTTTACCTTTATGCTATCTGGCCATGTTGCTGGGTCCTGGTGGTACCTCTTCAGTTTGCAGAGGGTTACTAAGTGTCTACAAGATGCCTGCAATCCAGCAGAAATTAATGATTGCACAAAATTCATTGATTGTGGGCATGGAAAAACTGAACAATATCAAACTTACCCAAATTGGGTTAAATGGAAGAACAGTTCTGTTGCAAGTGCTTGTTTTACTGAAGATGGTTTTCGTGATGGTTATGGTATCTTTGTTAAAGCTGTCAACCTTACTGCAGATCCTAGTGTGATCACTAGATATGTATATTCATCATTTTGGGGATTCCAGCAAATTAGTACACTGGCTGGGAATTTAGACCCTAGCTATTATGTTCCTGAAGTCCTTTTTACTGTGGCCATTATAGGATCGGGACTGTTGCTGTTTGCTCTTCTCATTGGACACATACAGAACTTTCTTCAGGCTCTTGGACGCAGGAGGCTAGAAATGTCACTTAGACGACGTGATGTTGAACAATGGATGAGCCATCGGCGCTTAGCAGAAGATCTAAGAAGGAGAGTGCGGCAGGCTGAACGTTATAACTGGGCCGCAACGAGGGGGGTGAATGAAGAAAAGCTCTTGGAGAATTTGCCAGAAGACCTCCAAAGGGACATCAGACGCCATCTCTTTACATTTATTAAGAAAGTTCGAATATTTGCCTTGTTGGATGAGCCTATCTTGGATGCAATATGCGAGAGGCTAAGACAAAAAACATATATAAAAGGAAGCAAAATTTTGTATGATGGTGGTTTGGTAGAGAAGATGGTTTTTATTGTGCGTGGAAAATTAGAGAGCATTGGCGAAGATGGAATTAGTGCTCCCCTTTATGAAGGGAGTGTTTGTGGCGAAGAACTTCTGACATGGTGTCTTGAGCATCCTTTAGCAAGCAAAGGTTGTGGAAAAGCAAGGATTCCAAGGCAAAAGTTTGTTAGTAACAGGACAGTATGTTGCTTAACAAATGTGGAGGCATTTTCCCTTACAGCAGCAGACCTTGAAGAAGTTACAGGCCTATTTGCAAGATTCTTTCGGAGTCCACGTGTTCAAGGAGCCATAAGGTATGAATCACCTTACTGGAGATGCTTTGCAGCAACAAGCATCCAGGTTGCATGGAGATACAGGATGAAATGTCTTAGTCGTGCTGACACCACACGATCAAATGAAACATCAAACATTTACAATTCACTGTAA 2340 0.406 MANFEKDEVPIFSDIHPKLSNEPFDSKFPRRVPRTRSVSISIPATLTEPYERETNLVGYTGPLRSQRKTPFNQMSGPLYVTNKPGNLFRQNRVAPEYQTAESKTENFPSCCGMGENDLQNNYAGKNEHLVRSGPLGMCNDPYCTTCPTYFKATQQMNSKASGIFNPKFRNTLYGDARDWARRLFAFLIPLVPRVMNPHNKLVQQWNKFFAICCLVAIFVDPLFFFLLSVQKENKCIVIHRTMTNMLVVLRSMNDFIHFLNIVLQFRLAYVAPESRVVGAGELVDHPKKIALHYLRTSFIIDLFVVLPLPQILILCVLPKHLGTGSSGANYANNFLRIVILVQYIPRLCRFLPMLISPTGFIFESPWASFFINLFTFMLSGHVAGSWWYLFSLQRVTKCLQDACNPAEINDCTKFIDCGHGKTEQYQTYPNWVKWKNSSVASACFTEDGFRDGYGIFVKAVNLTADPSVITRYVYSSFWGFQQISTLAGNLDPSYYVPEVLFTVAIIGSGLLLFALLIGHIQNFLQALGRRRLEMSLRRRDVEQWMSHRRLAEDLRRRVRQAERYNWAATRGVNEEKLLENLPEDLQRDIRRHLFTFIKKVRIFALLDEPILDAICERLRQKTYIKGSKILYDGGLVEKMVFIVRGKLESIGEDGISAPLYEGSVCGEELLTWCLEHPLASKGCGKARIPRQKFVSNRTVCCLTNVEAFSLTAADLEEVTGLFARFFRSPRVQGAIRYESPYWRCFAATSIQVAWRYRMKCLSRADTTRSNETSNIYNSL 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02868 779 SMART cnmp_10 602 737 IPR000595 -
Pumo6g02868 779 SUPERFAMILY cAMP-binding domain-like 530 725 IPR018490 -
Pumo6g02868 779 Gene3D Jelly Rolls 600 724 IPR014710 -
Pumo6g02868 779 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 138 764 - -
Pumo6g02868 779 Gene3D - 206 527 - -
Pumo6g02868 779 ProSiteProfiles cAMP/cGMP binding motif profile. 602 680 IPR000595 -
Pumo6g02868 779 Gene3D Helix hairpin bin 530 594 - -
Pumo6g02868 779 Pfam Ion transport protein 205 530 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pumo6g02868 779 SUPERFAMILY Voltage-gated potassium channels 197 531 - -
Pumo6g02868 779 CDD CAP_ED 602 718 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02868 Pumo-Chr6 68654036 68666061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02868 5 682 Ion Channels AT3G17700 58.832 0.0 770
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02868 K05391 - gmx:100795955 1409.43