Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02860 ATGGAGTATGGAAGTGGTTCTCCTGGTGATCACCATCATCACCATGATGGTTCTTCTGATTCCCAGAGAAGGAAGAAGCGTTACCACCGTCACACAGCTAACCAGATTCAGAGGCTTGAATCGATGTTCAAGGAGTGTCCGCACCCAGATGAGAAGCAGAGGTTGCAGTTGAGTAGGGAGTTAGGCTTGGCGCCTAGACAGATCAAATTTTGGTTCCAGAACAGGAGGACCCAGATGAAGGCTCAGCATGAGAGAGCTGATAATTGTTCACTCCGGGCAGAGAATGACAAGATTCGTTGTGAGAACATAGCCATAAGGGAGGCCTTGAAAAATGTTATCTGCCCCTCTTGTGGTGGTCCTCCTATGAATGATGATTGTTACTTTGATGAACAGAAGTTGAGATTGGAGAATGCCCAACTCAAAGAGGAGCTTGATAGAGTATCTAGCATTGCAGCCAAGTACATTGGAAGGCCAATTTCTCAACTCCCACCTGTTCAGCCTATTCATATATCTTCTCTGGATTTGTCAATGGGGACTTTTGCAACCCAAGGGTTAGGTGGTCCTTCCCTTGATCTTGATCTTCTCCCAGGGAGTTCTTCATCATCCATGCCGAATGTGCCTCCTTTCCAACCCGCTTGTCTCTCGGACATGGATAAGTCCCTCATGTCAGACATTGCCTCAAATGCCATGGAGGAAATGATCAGGCTATTGCAAACAAATGAGTCCTTGTGGATAAAAAGTGCTGATGGGAGGGATGTGCTTGATCTTGACACCTATGAAAGAATGTTCCCTAAGGCTAATAGTCACTTGAAGAACCCCAATGTTCATATTGAAGCTTCTAGAGATTCAGGAGTTGTAATTATGAATGGCTTAACTTTGGTTGACATGTTTATGGATCCGAACAAGTGGATGGAGCTATTTCCCACCATTGTCACAATGGCTAGAACAATTGAGGTTATATCTTCTGGAATGATGGGAGGTCATAGTGGTTCTTTGCAATTGATGTATGAAGAGTTGCAAGTGCTTTCTCCACTTGTTTCTACAAGAGAATTCTACTTCCTGCGTTACTGTCAACAAATTGAACAAGGCTTATGGGCAATAGTGGATGTTTCATATGATTTTCCTCAAGATAACCAATTTGCTCCTCAATTTCGATCTCATCGTCTTCCTTCTGGAGTCTTTATCCAAGACATGCCTAATGGATATTCCAAGGTTACATGGATTGAACATGTAGAGATTGAAGATAAAACTCCAGTTCATAGGCTCTACAGGAACATTATTTATAGTGGCATTGCATTTGGAGCACAAAGATGGCTAACTACACTTCAGAGGATGTGTGAAAGGATTGCTTGTCTAATGGTGACAGGCAATTCTACCCGCGATCTTGGAGGAGTGATTCCCTCTCCTGAGGGCAAGAGGAGCATGATGAAACTTGCACAAAGGATGGTCACCAATTTCTGTGCAAGCATTAGTGCATCAGCTGGCCATAGATGGACCACACTCTCTGGGAGTGGGATAAATGAGATTGGAGTCAGAGTCACTGTGCACAAGAGCTCAGACCCTGGCCAACCTAATGGTGTGGTGCTAAGTGCAGCCACCACCATTTGGCTCCCCGTCCCTCCACAAACTGTGTTCAATTTCTTCAAGGATGAAAAGAAAAGGCCTCAGTGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTCCACACCCTGGTAACTGCATCTCTGTGCTTCGAGCATTCAACTCAAGTCAAAACAACATGCTGATCCTCCAGGAGAGCTGTGTGGACTCCTCAGGCTCCCTAGTGGTGTACTGTCCAGTTGATCTGCCAGCCATCAACATAGCAATGAGTGGTGAGGACCCTTCCTACATCCCCCTCCTCCCCTCAGGCTTCACCATCTCCCCGGACGGCCAGCCGGACCAAGACGGTACCGGAGGAGCCTCAAGCAGCACAGGCACAAGCAGCAGGATCATGGGGGGTGGCTCTGGTGGCTCACTCATCACTGTTGCATTCCAAATCCTAGTGAGTAGCTTGCCATCTGCCAAACTCAACATGGAGTCGGTGGCCACTGTTAATAGCCTTATCGGCAACACTGTCCAACACATTAAGGCTGCTTTGAATTGTCCTAGTTCCTGA 2160 0.4644 MEYGSGSPGDHHHHHDGSSDSQRRKKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCSLRAENDKIRCENIAIREALKNVICPSCGGPPMNDDCYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMGTFATQGLGGPSLDLDLLPGSSSSSMPNVPPFQPACLSDMDKSLMSDIASNAMEEMIRLLQTNESLWIKSADGRDVLDLDTYERMFPKANSHLKNPNVHIEASRDSGVVIMNGLTLVDMFMDPNKWMELFPTIVTMARTIEVISSGMMGGHSGSLQLMYEELQVLSPLVSTREFYFLRYCQQIEQGLWAIVDVSYDFPQDNQFAPQFRSHRLPSGVFIQDMPNGYSKVTWIEHVEIEDKTPVHRLYRNIIYSGIAFGAQRWLTTLQRMCERIACLMVTGNSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCASISASAGHRWTTLSGSGINEIGVRVTVHKSSDPGQPNGVVLSAATTIWLPVPPQTVFNFFKDEKKRPQWDVLSNGNAVQEVAHIANGPHPGNCISVLRAFNSSQNNMLILQESCVDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGQPDQDGTGGASSSTGTSSRIMGGGSGGSLITVAFQILVSSLPSAKLNMESVATVNSLIGNTVQHIKAALNCPSS 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02860 719 Pfam START domain 225 448 IPR002913 GO:0008289
Pumo6g02860 719 Gene3D - 10 96 - -
Pumo6g02860 719 ProSiteProfiles START domain profile. 215 451 IPR002913 GO:0008289
Pumo6g02860 719 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 22 715 IPR042160 -
Pumo6g02860 719 MobiDBLite consensus disorder prediction 1 32 - -
Pumo6g02860 719 CDD START_ArGLABRA2_like 219 447 - -
Pumo6g02860 719 CDD homeodomain 24 83 IPR001356 GO:0003677
Pumo6g02860 719 SUPERFAMILY Bet v1-like 469 711 - -
Pumo6g02860 719 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Pumo6g02860 719 SMART HOX_1 23 86 IPR001356 GO:0003677
Pumo6g02860 719 FunFam Homeobox-leucine zipper protein HDG1 11 98 - -
Pumo6g02860 719 SMART START_1 224 448 IPR002913 GO:0008289
Pumo6g02860 719 Gene3D - 223 448 IPR023393 -
Pumo6g02860 719 MobiDBLite consensus disorder prediction 642 663 - -
Pumo6g02860 719 SUPERFAMILY Bet v1-like 216 449 - -
Pumo6g02860 719 SUPERFAMILY Homeodomain-like 5 82 IPR009057 -
Pumo6g02860 719 Coils Coil 130 150 - -
Pumo6g02860 719 MobiDBLite consensus disorder prediction 1 23 - -
Pumo6g02860 719 MobiDBLite consensus disorder prediction 637 663 - -
Pumo6g02860 719 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Pumo6g02860 719 FunFam Homeobox-leucine zipper protein GLABRA 2 224 447 - -
Pumo6g02860 719 Pfam Homeodomain 25 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02860 Pumo-Chr6 68399755 68404023 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02860 20 719 Homeobox Transcription Factor Family AT1G73360 66.525 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo6g02860 START 8.7e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02860 K09338 - gmx:100809075 1320.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02860 6 68399755 68404023 Pumo6g02860 6 68399755 68404023 ECH