LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo6g02859	ATGGAGATGCAGGACCAAATAGAAAGCACAAGATCAACCATATTTGGCTCAGCTAGTAACTGCCATTCCAGCGGTGAAAAACAATCTGAAAATGTTGCCCATATACCTTCTGTTGGAAACAGCCATACTCCCAAGGTGAGGAAACCATATACCATTACTAAACAAAGGGAGAAGTGGACAGAGGAAGAGCATCAGAAGTTTCTTGAAGCTTTGAAATTGTATGGTCGTGGCTGGTGCCAAATTGAAGAGCATATAGGTACCAAAACTGCTGTTCAGATTCGAAGTCATGCTCAAAAGTTTTTCTCTAAGGTTGTGAGGGAATCTGATGGCAGTGCTGAGAGTTCTATACAGCCAATTAACATACCTCCTCCTCGGCCTAAGAGGAAACCCCTCCATCCATATCCCCGCAAATCAGTTGACTCTTTCAGAGGACACACCATACCAAATGAAACAGAAATATCTCCATCTACAAACCTGTTAGTTGCAGAGAAAGACACCCCGTCTCCGACCTCGGTGCTATCTACGGTTGGTTCGGAAGCATTTGGGTCTGCGTTTTCAGAGCAGACTAACAGATGCCTTTCACCAAACTCTTGCACCACTGATATTCACTCAGTCAGCTTGTCACCTGCTGAAAAGGAAAATGATTGCATGACATCCAAAGCATCTGAGGAGGAAGAGAAAGGATCACCAGCTTCACTTCGTTTATCCACTGTTTCTAACCCAAACATATGCATGAAGCCCGAGATTAGTTCCAAGGAAACCGAATGTCTCGTAGAAGATGCTGCCAATATGCCACAAACCACTAGTATTAAGCTTTTTGGAAGAACAGTCTCTATGGTAGGTAATCAGAAGTCACTGAACATAGACGATGATGGTAAGCCAATAACTGTGAAGTCTGATGAAGTAGATGATGTTGAGAATGAGAAGCTTGGCCAATCAGGAGAATCCAAGCAATTAGATACACAATTATCACTAGGCTTGGTTAGTGGTAACTGGCCTATAACACCTGATGCCAATGAAGCTAATGTGACCAGCATAGAGCCCCCAAAGGAGAACCTATGCTTCAGTGAATGTGCACCTGATGCATCATCTTTTCCACAGTGGAGTTTGTACCAAGGCCTTCCCGCTTTCTACCTCAGGCCATGCAATCAGGTCCTAAACCCCTTGCCTCTTAGGCCCTCTTTGAAAGTAAGAACAAGAGAGGAGGAAAGTTGTTGCACTGGTTCCAACACTGAATCAGTTTGTGACATGGAAAACCAAGGCAAGAACTCAGATGCTGTTGATTCTAAGCATCAAAAATATAACGAGGAAGGAGCTGCACCCCAGAAGCCTGCAAGGGGGTTTGTACCATATAAAAGATGTTTAGCTGAAAGAGATGGAAATTCATTAATTGTTGCCTTGGAAGAGAGGGAGGGACAACGAGCTCGTGTGTGCTCATAG	1440	0.441	MEMQDQIESTRSTIFGSASNCHSSGEKQSENVAHIPSVGNSHTPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWCQIEEHIGTKTAVQIRSHAQKFFSKVVRESDGSAESSIQPINIPPPRPKRKPLHPYPRKSVDSFRGHTIPNETEISPSTNLLVAEKDTPSPTSVLSTVGSEAFGSAFSEQTNRCLSPNSCTTDIHSVSLSPAEKENDCMTSKASEEEEKGSPASLRLSTVSNPNICMKPEISSKETECLVEDAANMPQTTSIKLFGRTVSMVGNQKSLNIDDDGKPITVKSDEVDDVENEKLGQSGESKQLDTQLSLGLVSGNWPITPDANEANVTSIEPPKENLCFSECAPDASSFPQWSLYQGLPAFYLRPCNQVLNPLPLRPSLKVRTREEESCCTGSNTESVCDMENQGKNSDAVDSKHQKYNEEGAAPQKPARGFVPYKRCLAERDGNSLIVALEEREGQRARVCS	479

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo6g02859	479	MobiDBLite	consensus disorder prediction	423	437	-	-
	Pumo6g02859	479	MobiDBLite	consensus disorder prediction	204	236	-	-
	Pumo6g02859	479	SMART	sant	55	103	IPR001005	-
	Pumo6g02859	479	ProSiteProfiles	SANT domain profile.	54	105	IPR017884	-
	Pumo6g02859	479	SUPERFAMILY	Homeodomain-like	50	104	IPR009057	-
	Pumo6g02859	479	Gene3D	-	58	105	-	-
	Pumo6g02859	479	Pfam	Myb-like DNA-binding domain	56	99	IPR001005	-
	Pumo6g02859	479	MobiDBLite	consensus disorder prediction	417	444	-	-
	Pumo6g02859	479	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	51	105	IPR017930	-
	Pumo6g02859	479	MobiDBLite	consensus disorder prediction	111	152	-	-
	Pumo6g02859	479	MobiDBLite	consensus disorder prediction	216	230	-	-
	Pumo6g02859	479	MobiDBLite	consensus disorder prediction	1	48	-	-
	Pumo6g02859	479	PANTHER	SWI/SNF COMPLEX-RELATED	25	268	-	-
	Pumo6g02859	479	MobiDBLite	consensus disorder prediction	1	50	-	-
	Pumo6g02859	479	FunFam	protein REVEILLE 6 isoform X1	58	106	-	-
	Pumo6g02859	479	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	54	103	IPR006447	GO:0003677
	Pumo6g02859	479	CDD	SANT	58	101	IPR001005	-
	Pumo6g02859	479	ProSiteProfiles	Myb-like domain profile.	51	101	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo6g02859	Pumo-Chr6	68366640	68371254	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Pumo6g02859		Myb_DNA-binding	2.2e-12	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo6g02859	-		-	gmx:778089	856.67