Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02858 ATGGCTAACAACGTCTTTGTTGCTGTTAAGGTAGCTGCTCTTCCTCTGCTTCCATTACCCATAACAGATAATTCTCTCATTTTCAGCCACCAAAATCACAAACTTCATCTGAATTGTTCCCAAACCAAAAACAGAACAACCCCATTCCCTTCTTCCTTCTCAATCTTCACAAACAAAGCTAGTTGCTCTGTGTTGGCGTGTCTCCCTCCTGCTTCTTCCGAATCCTCAACCTCATCTTCCACTGCTAAACCCTCTTTTCCTTCTCCTCCAACGAAGCTTTATGTCAGTGGGCTATCATTTCGTACCACTGAAGAGAGTTTGCGAAATGCGTTTAAGAATTTTGGTCAACTTGTGGAAGTCAAGCTGGTGATGGATAAAATTGCAAATAGACCGAGAGGGTTTGCTTTTCTTCGTTATGCAACTGAAGAAGAATCCCAGAAGGCTATTGAGGGAATGCATGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCCAAACCGAGATCAGAGCTACCGCCAAGGCACAAGGAAAACACAAGATTGTAA 552 0.4312 MANNVFVAVKVAALPLLPLPITDNSLIFSHQNHKLHLNCSQTKNRTTPFPSSFSIFTNKASCSVLACLPPASSESSTSSSTAKPSFPSPPTKLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDKIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELPPRHKENTRL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02858 183 PANTHER NUCLEOLAR PROTEIN 8 71 177 - -
Pumo6g02858 183 Gene3D - 68 180 IPR012677 -
Pumo6g02858 183 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 162 IPR000504 GO:0003723
Pumo6g02858 183 FunFam Organelle RRM domain-containing protein 6, chloroplastic 76 182 - -
Pumo6g02858 183 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 169 IPR000504 GO:0003723
Pumo6g02858 183 SMART rrm1_1 92 165 IPR000504 GO:0003723
Pumo6g02858 183 SUPERFAMILY RNA-binding domain, RBD 82 176 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02858 Pumo-Chr6 68363328 68366371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02858 91 182 Eukaryotic Initiation Factors Gene Family AT4G34110 28.125 1.50e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02858 - K13195 gmx:100305561 268.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02858 6 68363328 68366371 Pumo6g02858 6 68363328 68366371 ECH