Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02856 ATGTCACCGGTTGGATTACCACCTGGCTTTAGGTTCCATCCAACCGATGAAGAGCTTGTCAACTACTATCTCAAGAGGAAGATCAATGGCCAAGAAATTGAACTTGATATCATTCCTGAAGTTGATCTCTACAAATGTGAACCATGGGAATTAGCAGAGAAATCATTTTTGCCAAGTAGAGACCCAGAGTGGTATTTTTTTGGACCCCGGGATAGGAAATACCCGAATGGGTTTAGGACAAATAGAGCAACTCGTGCAGGGTACTGGAAGTCCACTGGGAAAGACAGAAGAGTTTCATGCCAAAGCAGACCTATTGGTATGAAGAAGACTTTGGTGTACTATAGAGGCAGAGCTCCTCAAGGGATCAGAACTGATTGGGTAATGCATGAGTATCGCCTTGATGACAAAGAGTGTGAGGACACCACTGGATTACAGGACACTTATGCATTGTGCCGTGTGTTCAAGAAAAATGGAATCTGTTCTGATATTGAAGAGCAAGGACAATGTAGTATATCACTAATTGAGAGCTCCCAAACCTTAATTAATGAGTGTGAAACCATGTCACCTGACATACCAGGGGCATCATCATCATGCTTGGAAGAGGAGGACAAAGATGATTCATGGATGCAGTTCATCACAGAAGATGCATGGTATTCTTCTAATGCAGCTATGGTTGGTGGTGAAGAAGTGTCACATGTTACATTTACAAACTAA 714 0.4244 MSPVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEVDLYKCEPWELAEKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVSCQSRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKECEDTTGLQDTYALCRVFKKNGICSDIEEQGQCSISLIESSQTLINECETMSPDIPGASSSCLEEEDKDDSWMQFITEDAWYSSNAAMVGGEEVSHVTFTN 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02856 237 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Pumo6g02856 237 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Pumo6g02856 237 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Pumo6g02856 237 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 187 - -
Pumo6g02856 237 FunFam Nac domain-containing protein 86 15 159 - -
Pumo6g02856 237 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02856 Pumo-Chr6 68350681 68354481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02856 1 226 NAC Transcription Factor Family AT3G17730 76.349 4.55e-133 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pumo6g02856 NAM 9.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02856 - - gmx:100784495 500.36