Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02855 ATGGTCAGGAAGAGAAGAACCGAATTACCTAGTGGGGGTGAAAGCTCTGAGCCTCAACGCCCTGCTGAAAGGAGTGCACCACCCCAACAACAGGCTGCTGCTGCCCCAGGAGGGGCTGGACCCCAAGGAGGCAGAGGCTGGGGTCCTCAAGGAGGACGAGGAGGTTATGGTGGGGGCCGCGGCCGTGGGATGCCCCAACAGCAATATGGTGCCCCTCCTGATTATCAAGGTAGGGGAAGGGGAGGGCCTTCTCAGCAAGGAGGCCGTGGAGGATATGGCGGTGGCCGAAGTGGTGGTGGTGGTATGGGCAGTGGCCGTGGCGTAGGTCCTTCATATGGTGGTGGCCCATCCAGGCCACCGGCACCCGAGCTGCACCAAGCAACCTCAGTTCAGTCATATCAAACTGGGGTGAGTTCTCAGCCTGCATCATCTGAGGCCAGTTCTTCCCTGCCGCCTGAACCTGTTGATTTGGAAGAGTCGATGGGGCAGATGGTGGTTCATTCTGAACCTGCTCCTACTCCTCCTCCCGCGAGTAAATCATCAATGAGGTTTCCCCTTCGACCTGGAAAGGGTAGCTATGGCACCAAATGCATTGTCAAGGCTAATCATTTCTTTGCTGAGTTACCTAAAAAAGATCTGCATCAATATGATGTTACAATTACTCCTGAAGTGACATCGAGAGGGGTGAACCGTGCTGTTATGGAGCAGTTGGTGAAGCTGTACCGGGAATCTCACTTGGGTAAGAGACTTCCTGCATATGATGGACGCAAGAGCCTCTATACTGCTGGTCCACTTCCTTTTATTTCAAAGGAGTTCAGAATCACTCTCATTGATGACGATGAAGGAGCAGGAGGCCAGAGGAGGGACAGGGAGTTCAAGGTTGTCATAAAATTGGCTGCACGTGCTGACCTTCACCATTTAGGACTCTTTTTACAGGGAAGGCAAACTGATGCTCCTCAAGAGGCTTTGCAGGTCCTTGACATTGTTCTGCGCGAACTCCCTACTACAAGGTATTGTCCTGTAGGGAGATCATTTTATTCACCTGATTTGGGCAGAAGGCAGCCTTTAGGTGAGGGATTGGAAAGCTGGCGTGGTTTCTACCAGAGTATTCGTCCTACACAGATGGGACTGTCACTGAACATTGATATGTCTTCCACTGCATTTATTGAGCCATTGCCAGTAATTGACTTCGTAACTCAACTGCTTAACAGAGATGTATCTGCCCGACCACTGTCTGATGCTGATCGCGTGAAGATCAAGAAAGCTCTCCGAGGTATCAAAGTTGAAGTAACACACCGTGGAAACATGAGAAGAAAATATCGTATCTCTGGTCTGACTTCACAGGCAACCAGAGAGTTGACATTCCCCGTGGATGAAAGGGGAACCATGAAATCTGTTGTGGAGTACTTCTATGAGACATATGGATTTGTCATTCAGCATACTCAGTGGCCTTGTCTGCAAGTTGGCAATACACAGAGACCAAACTATTTGCCAATGGAGGTTTGCAAGATAGTGGAAGGTCAAAGGTACTCGAAGAGGTTGAATGAGCGACAAATCACTGCTTTGCTTAAAGTCACATGCCAGCGTCCTGTTGAGAGGGAGCGTGATATCATGCAGACAGTACACCACAATGCCTATCATGAAGATCCTTATGCTAAAGAATTTGGAATCAAGATTAGTGAGAAGCTTGCTCAAGTTGAAGCTCGCATCCTTCCTGCTCCATGGCTCAAATATCACGATACGGGCAGAGAAAAGGATTGTCTTCCTCAAGTTGGGCAATGGAATATGATGAATAAGAAAATGGTGAATGGAGGAACAGTTAACCACTGGTTCTGCATAAACTTTTCAAGGACTGTTCAGGATAGTGTTGCCCGTGGTTTTTGCTATGAACTTGCCCAGATGTGTTATATATCTGGCATGGCATTTAATCCTGAGCCAGTAGTTCCCCCAGTCGGTTCTCGCCCTGATCAAGTGGAAAAGGTTCTAAAAACTCGTTATCACGATGCCAAGAGTAAAACGCAGGGAAGGGACCTTGATTTGCTCATTGTTATTTTGCCTGATAACAATGGATCTCTCTATGGTGACCTCAAACGTATATGTGAGACCGATCTTGGACTTGTTTCACAATGTTGCTTAACTAAGCATGTCTTCAAAATGAGCAAGCAGTACCTCGCAAATGTTGCTTTGAAAATTAATGTCAAAGTTGGAGGGAGGAACACTGTACTTGTTGATGCGCTCTCACGACGCATTCCATTGGTCAGTGACAGACCTACAATTATTTTTGGAGCTGATGTTACTCATCCACATCCTGGAGAAGATTCAAGCCCATCCATTGCAGCAGTTGTGGCGTCTCAAGATTATCCTGAAATTACAAAGTATGCTGGTTTAGTTTGTGCCCAAGCTCATAGGCAGGAACTTATTCAGGATCTTTTCAAACAATGGCAAGATCCAGTCAGAGGAACAGTGACTGGTGGAATGATCAAAGAACTTCTTATATCTTTTAGGAGAGCTACAGGACAGAAGCCGCAACGCATCATATTTTACAGGGATGGTGTGAGTGAAGGACAGTTTTATCAAGTTCTACTGTTTGAGCTTGATGCTATTCGAAAGGCATGTGCATCCCTGGAACCCAACTATCAGCCTCCTGTGACTTTTGTGGTGGTTCAAAAGCGTCACCACACAAGGCTCTTTGCCAGCAACCATCATGACAAGAGTTCTGTTGACAGGAGTGGCAATATATTGCCTGGCACCGTTGTAGACTCCAAAATCTGCCATCCAACTGAATTTGACTTTTATCTCTGCAGCCATGCTGGAATACAGGGTACAAGCCGTCCTGCTCACTACCATGTGTTGTGGGATGAAAACAATTTTACTGCTGATGCCTTACAGACACTTACCAACAATCTTTGCTACACATATGCTCGATGCACACGATCTGTTTCAATTGTGCCTCCTGCATATTATGCCCACCTTGCTGCATTCCGCGCAAGGTTTTACATGGAACCGGAGACTTCGGATAGTGGCTCGATGACAAGTGGGGCTGTTGCAGGCCGTGGAATGGGCGGTGGTGGCGGCGGCCCCATAGGGCGTAGTACCCGTGCACCTGGTGTTAATGCTGCAGTGAGACCATTACCTGCACTCAAGGAGAATGTCAAGAGAGTTATGTTTTATTGTTAA 3177 0.4753 MVRKRRTELPSGGESSEPQRPAERSAPPQQQAAAAPGGAGPQGGRGWGPQGGRGGYGGGRGRGMPQQQYGAPPDYQGRGRGGPSQQGGRGGYGGGRSGGGGMGSGRGVGPSYGGGPSRPPAPELHQATSVQSYQTGVSSQPASSEASSSLPPEPVDLEESMGQMVVHSEPAPTPPPASKSSMRFPLRPGKGSYGTKCIVKANHFFAELPKKDLHQYDVTITPEVTSRGVNRAVMEQLVKLYRESHLGKRLPAYDGRKSLYTAGPLPFISKEFRITLIDDDEGAGGQRRDREFKVVIKLAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSARPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNTQRPNYLPMEVCKIVEGQRYSKRLNERQITALLKVTCQRPVERERDIMQTVHHNAYHEDPYAKEFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWFCINFSRTVQDSVARGFCYELAQMCYISGMAFNPEPVVPPVGSRPDQVEKVLKTRYHDAKSKTQGRDLDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDYPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDKSSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAVAGRGMGGGGGGPIGRSTRAPGVNAAVRPLPALKENVKRVMFYC 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02855 1058 MobiDBLite consensus disorder prediction 166 185 - -
Pumo6g02855 1058 Pfam Mid domain of argonaute 589 664 IPR032473 -
Pumo6g02855 1058 SMART PAZ_2_a_3 396 528 IPR003100 GO:0005515
Pumo6g02855 1058 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 174 1001 - -
Pumo6g02855 1058 Pfam Argonaute linker 1 domain 340 390 IPR014811 -
Pumo6g02855 1058 CDD Piwi_ago-like 550 1000 IPR045246 -
Pumo6g02855 1058 FunFam protein argonaute 10-like 749 1058 - -
Pumo6g02855 1058 MobiDBLite consensus disorder prediction 124 150 - -
Pumo6g02855 1058 SMART Piwi_a_2 680 1001 IPR003165 GO:0003676
Pumo6g02855 1058 MobiDBLite consensus disorder prediction 1 156 - -
Pumo6g02855 1058 Pfam Glycine-rich region of argonaut 70 172 IPR024357 -
Pumo6g02855 1058 Pfam Argonaute linker 2 domain 532 578 IPR032472 -
Pumo6g02855 1058 Gene3D - 749 1058 IPR036397 GO:0003676
Pumo6g02855 1058 ProSiteProfiles Piwi domain profile. 680 1001 IPR003165 GO:0003676
Pumo6g02855 1058 Pfam Piwi domain 681 1000 IPR003165 GO:0003676
Pumo6g02855 1058 ProSiteProfiles PAZ domain profile. 392 506 IPR003100 GO:0005515
Pumo6g02855 1058 SUPERFAMILY Ribonuclease H-like 666 1001 IPR012337 -
Pumo6g02855 1058 CDD PAZ_argonaute_like 391 505 - -
Pumo6g02855 1058 Pfam PAZ domain 396 521 IPR003100 GO:0005515
Pumo6g02855 1058 FunFam Protein argonaute-2 385 511 - -
Pumo6g02855 1058 Gene3D - 570 743 - -
Pumo6g02855 1058 SMART DUF1785_2 339 391 IPR014811 -
Pumo6g02855 1058 FunFam Argonaute 10 570 743 - -
Pumo6g02855 1058 SUPERFAMILY PAZ domain 198 543 IPR036085 GO:0005515
Pumo6g02855 1058 Gene3D paz domain 385 510 - -
Pumo6g02855 1058 Pfam N-terminal domain of argonaute 196 330 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02855 Pumo-Chr6 68294774 68301898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02855 74 1058 Eukaryotic Initiation Factors Gene Family AT1G48410 81.332 0.0 1629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02855 K11593 - gmx:100780375 1853.18