Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02849 ATGGCTGCAACAACACATTCCCGTGCATCCATCTACGATGTGTTCCTCAGCTTCAGAGGTTTAGACACACGCTATGGTTTTACTGGCAATCTCTACAAAGCTCTTCATGACAGGGGAATCTACACTTTCATTGATGATGAGGAGCTTCAGGGAGGAGACGAAATAACACCAGCACTTCTGAAGGCAATTGAAGAGTCCAGGATTGCCATCACTGTGCTCTCTGAAGACTATGCTTCTTCCTCATTTTGCTTAGAGGAACTTGCAGCCATCCTTCACTGTGTCGAGAATAAAGGGATGTTGGTTATACCGGTCTTTTATCAGGTGGATCCTTCGGATGTCAGACACCAGAAAGGTAGTTATGGAGAGGCATTGGCTAAGCATGAGAAAAGGTTCAAAGCTGAGAAGGAGAAGTTGCGGAAATGGAAGAAGGCATTGCGTCAAGTAGCTAACTTGTCTGGCTATCATTTCAAAGATGGAGATGCATATGAATACAAGTTTATCGGGAGGATTGTTGAGCAGGTCTCTAGGGAGATTAATCGTGCTCCTTTACATGTTGCGGATTACCCAGTTGGCCTAGGGTCACAGGTGCTAAAGGTAAGGAAGCTTTTGGATGTTGGATCTGATGATGTTGTCCACATGATAGGGATCCATGGAATGGGTGGGCTAGGAAAAACAACACTTGCTCTGGCAATTTATAATTTGATTGCTGATCATTTTGATGGTTCATGTTTTCTTCAAAATGTGAGAGAAGAATCAAACAAACATGGGTTAAAACACCTCCAAAGCATCCTTCTTTCAGAAATTCTTGGAGAGAAGGAAATCAACTTAGCAAGTGTGCAACGAGGAATTTCAATGATACAACAGAGGCTCCAGCGAAAGAAGGTTCTATTGATTCTAGATGATGTTGACAAGCGCGAACAATTAAAGGCTATTGTTGGAAGACCTGATTGGTTTGGTCCCGGTAGCAGAGTCATCATTACCACTCGGGATAAACATCTGCTAAAATCTCATGAGGTTGAAAGAACTTATGAGGTGGAGGTATTGAATGAGAATGATGCTCTTCAATTGCTTACATGGAATGCTTTTAAAAGGGAAAAAGTTGATCCAAGTTACAAGGACGTCTTGCATCGTGTAGTAATTTATGCTTCTGGCCTTCCATTGGCGTTGGAAGTAATAGGTTCCAACTTGTTTGGAAAAAGTGTAGCAGAATGGGAATCTGCTATTGAACATTATAAAAGAATACCTAGTGATGAAATCCTAGAGATACTTAAAGTAAGCTTTGATGCTTTGGGGGAAGAACAAAAAAGTGTTTTTCTTGACATTGCTTGTTGCTTGAAAGGGTATAAATGGACAGAGGTTGATGATATACTCCATGCTCTTTATGATCACTGCATGAAATATCATATTGGGGTGTTGGTTGAAAAATCTCTCATAAAGGTTAGCTATGGTACTGTTGTAATGCATGACTTGATTCAAGACATGGGTAGAGAAGTTGACCGGCAGAGATCACCAGAAGAACCAGGGAAATGCAAGAGATTATGGTTACCAGAAGATATAATTAAAGTTTTAAAAGACAACACGGGAACTAGTAAAATTGAAATCATATGTCTGGATTTCTCCATATCTGACAAAGAAGAAATAATAGAATGGAATGGAAATGCCTTCAAGGAAATGGAAAACCTTAAAATACTTATTATTAGAAATGGTTTCAGACAGTTTGCTCATGAACTGCACGAAGCTAGACAATCTTACTTTTGCTTACCAAGAGCAAGTATTCCAGAGTGGCTCGATCATCAAAGCTGGGGACCTTCAACTTCTTTCTGGTTTCGGAATAAATTCCCTGCCAAAGTTCTTTGTCTTCATATTGCGCCTGTGTTTCATTTCGTTAAACCCAAGGTGTTCATCAATGGCAAAGTTCAAGAATGTCGCTATTATCTTCTTAACAATACAAAAAAGTGTATGTTGAAATTGGATCATACATATCTCTTTGATCTACAGGAAATAGAGTTCGTTGATTATCTGTTTGAAGTGGGTTTAGAAAAGGAATGGAACCAAGTGGAGGTTACATATGTAGGTGTGTTCAAGACCTTACGGGTTAAAGCAACAGGAATCCATGTATTCAAACAGGAAAGCAGCATGGGCGATATTCGATTTGATGATCCTTATAGCAACACAAAAGTAGACCATCATCTCAACGGTTCCGAATCACAAAACCACTCGATGTTAAAAAGCATAGGTAAATATGGTTAA 2250 0.3969 MAATTHSRASIYDVFLSFRGLDTRYGFTGNLYKALHDRGIYTFIDDEELQGGDEITPALLKAIEESRIAITVLSEDYASSSFCLEELAAILHCVENKGMLVIPVFYQVDPSDVRHQKGSYGEALAKHEKRFKAEKEKLRKWKKALRQVANLSGYHFKDGDAYEYKFIGRIVEQVSREINRAPLHVADYPVGLGSQVLKVRKLLDVGSDDVVHMIGIHGMGGLGKTTLALAIYNLIADHFDGSCFLQNVREESNKHGLKHLQSILLSEILGEKEINLASVQRGISMIQQRLQRKKVLLILDDVDKREQLKAIVGRPDWFGPGSRVIITTRDKHLLKSHEVERTYEVEVLNENDALQLLTWNAFKREKVDPSYKDVLHRVVIYASGLPLALEVIGSNLFGKSVAEWESAIEHYKRIPSDEILEILKVSFDALGEEQKSVFLDIACCLKGYKWTEVDDILHALYDHCMKYHIGVLVEKSLIKVSYGTVVMHDLIQDMGREVDRQRSPEEPGKCKRLWLPEDIIKVLKDNTGTSKIEIICLDFSISDKEEIIEWNGNAFKEMENLKILIIRNGFRQFAHELHEARQSYFCLPRASIPEWLDHQSWGPSTSFWFRNKFPAKVLCLHIAPVFHFVKPKVFINGKVQECRYYLLNNTKKCMLKLDHTYLFDLQEIEFVDYLFEVGLEKEWNQVEVTYVGVFKTLRVKATGIHVFKQESSMGDIRFDDPYSNTKVDHHLNGSESQNHSMLKSIGKYG 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02849 749 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 180 - -
Pumo6g02849 749 Gene3D - 347 431 IPR042197 -
Pumo6g02849 749 Coils Coil 124 144 - -
Pumo6g02849 749 Gene3D - 179 343 IPR027417 -
Pumo6g02849 749 Pfam NB-ARC domain 198 413 IPR002182 GO:0043531
Pumo6g02849 749 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 154 IPR035897 -
Pumo6g02849 749 Gene3D - 9 178 IPR035897 -
Pumo6g02849 749 SMART AAA_5 210 351 IPR003593 GO:0016887
Pumo6g02849 749 SMART till_3 11 151 IPR000157 GO:0007165
Pumo6g02849 749 ProSiteProfiles TIR domain profile. 10 178 IPR000157 GO:0007165
Pumo6g02849 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 441 IPR027417 -
Pumo6g02849 749 PRINTS Disease resistance protein signature 382 396 - -
Pumo6g02849 749 PRINTS Disease resistance protein signature 213 228 - -
Pumo6g02849 749 PRINTS Disease resistance protein signature 289 303 - -
Pumo6g02849 749 SUPERFAMILY "Winged helix" DNA-binding domain 417 524 IPR036390 -
Pumo6g02849 749 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 608 IPR044974 GO:0006952
Pumo6g02849 749 Pfam TIR domain 12 179 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02849 Pumo-Chr6 68093467 68106358 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02849 190 525 WRKY Transcription Factor Family AT5G45050 35.103 4.98e-52 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02849 - - gmx:100817954 931.784