Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02848 ATGGCTCTAACAACACGTTCCCGTGCATCCACCTACGATGTGTTCCTTAGCTTTAGAGGCTCAGACACACGCCTTAGTTTTACTGGCAATCTCTACAAAGTGCTCGATAACAGGGGAATCTACACTTTCATTGATGATAAGGAGCTTCAGAGCGGAGACGAAATAACACCAGCACTTCTGAAGGCAATTGATGAGTCCAGGATTGCCATCATTGTGCTCTCTAACAACTATGCTTCTTCCTCGTTTTGCATAGACGAACTTGCCTACATCCTTGAGTGCCGTAAGAGTAAAGATCTGATGGTTTTGCCTGTCTTTTATGACCTGGATCCTTCTCACGTACGACACCAGATAGGTAGTTATGGAGAAGCATTGGCTAAGCATGAGAAGAGGTTGCAGAAAAACATGGAAAAGTTGCGGAAATGGAAGATGGCTCTGCGTCAAGTAGCTGACTTGTCTGGCTATCATTTCAAGCACGGTTGGCCTAGGGTCACAAGTGCTAGAGAGGTAAGGAAGCTTTTGGATGTTGGATCTGATGATGTCCACATCATAGGGATCCATGGAATGGGTGGGTTAGGAAAAACAACACTTGCTCTAGCAGTTTATAATTTGATTGCTGGACATTTTGATGGTTCATGTTTTCTTCAAAATGTGAGAAAAGAATCAAACAAACATGGCTTAAAACACCTTCAAAGCATCCTTCTTTCAGAAATACTTGGAGAGAAGGAAATCAGCTTAACAAGTGTGCAACAAGGAATTGCAATGATTCAACAGAGGCTCCAGCGGAAGAAGGTTCTCTTGATTCTAGATGATGTTGATAAGCACAAGCAATTAAAGGCTATTGTTGGAAGATCTGACTGGTTTGGTTCCGGTAGCAGAGTCATCATTACCACTCGAGACGAACAACTGCTAAAATATCATGAGGTTGAAAGAACTTATGAGGTGGAGGTATTGAATGAGAATGATGCTCTTCAATTGCTTACATGGAATGCTTTTAAAAGGGAAAAAGTTGATCCAAGTTACGAGGAGGTCTTACATCGTGTAGTAACTTATGCTTCTGGCCTTCCATTGGGTTTGGAAGTCATAGGTTCCAGTTTGTTTGGAAAATGTATTGAAGACTGGGAATCTGCCATAAATCAGTATAAAAGAATTCCTCATAATGATATCCAAGTTATTCTTAAAGTAAGCTTCGATGCTTTGCAGGATGAAGAGAAAAGTGTTTTTCTTGACATTGCTTGTTGCTTCAAAGGATATGAATTAGTAGAGGTTGAAGATATACTTGATGCTCATTATGGTCACAGCATGAAACATCATATTGGCGTGTTGGTAGAAAAATCTCTCATAAAGGAGCTTAGATGGAATCATAGAGTTACTGTTACATTGCATGACTTGATTGAGGATATGGGTAAAGAAATTGTCCGGCAGGAATCACCTAATAAGCCAAGGAAGCGCAGTAGATTATGGTTACCGAAACATATAATTCAAGTTTTGAAAGAAAACTCGAGAACTAGTAAAATTGAAATCATATATATGGATTTCCCCATATCGGACAAAGAAGAAACACTAGAATGGGATGGAAGCGCCTTCAAGGAGATGAAAAGCCTTAAAACACTTATTATTAAAAATGGGAAATTTTCCAAAGGTCCCAATTATTTTCCAGAAAGTTTGAGAAAGATCGGGAATCTAACAATTTTGAATTTTGACAAGTGCAAATTTTTAACACAGATACCTGATGTATCTGATCTCCCAAATTTGAAGGAACTTTCATTTAAAGAGTGTGAGAATTTAGCTGTAGTTCACGACTCAGTTGGTATTTTGGCTAAACTTAAAATACTGAGTGCTGAAGGTTGCAGCAAGCTTAGGAGTTTTCCACCTCTCAACTTGACCTCTCTTGAAAGACTTGAACTTTCAAAGTGTTCCAGTCTTGAGTATTTTCCAGAAATATTAGGAGAGATGGAAAACATATGGCAACTTCATTTGCAGTACACTCCCATAAAAGAGTTGCCCTTTTCATTTCAAAATCTTATTGGACTCCAATGGTTAAACCTGAGTGACTGTGGAATTGTTCGGTTACCAAGTAGCATTGGCATGATGCCTGAACTGTCTGTATTTGAAATTCGACGTTGCAACAGGTTTCACGTGGTTTGCTCATCACGTGGAAAGGTTACAGCTATGGAGGAATAA 2181 0.3934 MALTTRSRASTYDVFLSFRGSDTRLSFTGNLYKVLDNRGIYTFIDDKELQSGDEITPALLKAIDESRIAIIVLSNNYASSSFCIDELAYILECRKSKDLMVLPVFYDLDPSHVRHQIGSYGEALAKHEKRLQKNMEKLRKWKMALRQVADLSGYHFKHGWPRVTSAREVRKLLDVGSDDVHIIGIHGMGGLGKTTLALAVYNLIAGHFDGSCFLQNVRKESNKHGLKHLQSILLSEILGEKEISLTSVQQGIAMIQQRLQRKKVLLILDDVDKHKQLKAIVGRSDWFGSGSRVIITTRDEQLLKYHEVERTYEVEVLNENDALQLLTWNAFKREKVDPSYEEVLHRVVTYASGLPLGLEVIGSSLFGKCIEDWESAINQYKRIPHNDIQVILKVSFDALQDEEKSVFLDIACCFKGYELVEVEDILDAHYGHSMKHHIGVLVEKSLIKELRWNHRVTVTLHDLIEDMGKEIVRQESPNKPRKRSRLWLPKHIIQVLKENSRTSKIEIIYMDFPISDKEETLEWDGSAFKEMKSLKTLIIKNGKFSKGPNYFPESLRKIGNLTILNFDKCKFLTQIPDVSDLPNLKELSFKECENLAVVHDSVGILAKLKILSAEGCSKLRSFPPLNLTSLERLELSKCSSLEYFPEILGEMENIWQLHLQYTPIKELPFSFQNLIGLQWLNLSDCGIVRLPSSIGMMPELSVFEIRRCNRFHVVCSSRGKVTAMEE 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02848 726 Pfam NB-ARC domain 168 393 IPR002182 GO:0043531
Pumo6g02848 726 PRINTS Disease resistance protein signature 625 641 - -
Pumo6g02848 726 PRINTS Disease resistance protein signature 182 197 - -
Pumo6g02848 726 PRINTS Disease resistance protein signature 258 272 - -
Pumo6g02848 726 PRINTS Disease resistance protein signature 351 365 - -
Pumo6g02848 726 Gene3D Ribonuclease Inhibitor 488 648 IPR032675 -
Pumo6g02848 726 Gene3D - 316 400 IPR042197 -
Pumo6g02848 726 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 693 IPR044974 GO:0006952
Pumo6g02848 726 Pfam TIR domain 12 147 IPR000157 GO:0007165
Pumo6g02848 726 SUPERFAMILY L domain-like 460 709 - -
Pumo6g02848 726 Coils Coil 124 144 - -
Pumo6g02848 726 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 154 IPR035897 -
Pumo6g02848 726 Gene3D Ribonuclease Inhibitor 649 717 IPR032675 -
Pumo6g02848 726 ProSiteProfiles TIR domain profile. 10 173 IPR000157 GO:0007165
Pumo6g02848 726 Gene3D - 2 149 IPR035897 -
Pumo6g02848 726 SMART AAA_5 179 322 IPR003593 GO:0016887
Pumo6g02848 726 FunFam Disease resistance protein (TIR-NBS-LRR class) 8 173 - -
Pumo6g02848 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 167 410 IPR027417 -
Pumo6g02848 726 SMART till_3 11 151 IPR000157 GO:0007165
Pumo6g02848 726 Gene3D - 154 311 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02848 Pumo-Chr6 68083286 68086203 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02848 7 708 WRKY Transcription Factor Family AT4G12020 28.137 2.19e-64 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02848 - - gmx:100817954 973.385