Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02847 ATGTCTTCTGCCGGCGGCGACGGCACCTCCGGCGAGCCTCGCCAATACTTCTGCCACCAGTGCGACCGCACGGTCTCAATTTCCCCTTCCCCCTCCCCCGATCTCCTCTGCCCCAATTGCAACGGCGGCTTCCTCGAAGAACTCGAAATCCCAATCCCCAACCCTAACCCTAACCCTCCCAATCCCTTCTTCTCCGACTTCCCCCTCGCCGGCCCCACCGCCATTCCCCTCGTCCTCCCCGGCGCCGCTGCCGCCGCCGCCCCTCCCTTCGACGATCTCTCCGCCCTCTTCGGCAACCGATCCGACGCCGCCGCCGATGCCTTGAACCCCCTCGTCTTCCTCCAGAACTACTTCCAAACCCTAAGAGCCGGCGGCGGCGGCGGCAACCTCCAACTGGTGATCGAGTCCGGCGACCCCGCCGGAGCGTTCCGCCTCCCCGGCGTCACCCACGGCGACTACTTCTTCGGGCCCGGCCTCGAGGAGCTGATTCAGCACCTCGCCGAGAACGATCCCAACCGCTACGGCACCCCGCCGGCCTCCAAGTCCGTCGTCGAGGGCCTGCCGGACGTCTCCGTCACCGAGGAGCTCCTCGCGTCGGACTCCTCGCAGTGCGCCGTGTGCAAAGACACCTTCGAACTCGGCGAGACCGCGAAGCAGATACCATGTAAGCATATATATCACGCGGATTGCATTTTGCCTTGGTTGGAATTGCATAATTCTTGCCCCGTTTGTCGGTATGAGTTGCCCACAGATGATCCTGATTACGAGCAGAGGGCTCGTCGTGGTGGCGGTAGTGCCGGTGCCGGTGCCGGCAGTGGGGCAGCTCCGCAGATGAATTGGAACATGGCATTGGGGCAAGGTGGTTCTGCGGATTCGTCCGGTAGCGGTGGTGGTGATAATGCACAGAGGAGGAGGTTTAGGGTGTCTTTGCCGTGGCCGTTTAGACAATTTGTTTCTTCTGCTGAGACAAGTAATGTTGGGAGTGCCAACAATGATAACAGCAATAGCAATAGTGGCAATAGTGGAAATAATGGTGGGCAATCCACTTCTGGAAACCGGGGGAATCCAAATTTTGACTCGGAGACCAGACAGGAAGATCTCGATTGA 1107 0.6034 MSSAGGDGTSGEPRQYFCHQCDRTVSISPSPSPDLLCPNCNGGFLEELEIPIPNPNPNPPNPFFSDFPLAGPTAIPLVLPGAAAAAAPPFDDLSALFGNRSDAAADALNPLVFLQNYFQTLRAGGGGGNLQLVIESGDPAGAFRLPGVTHGDYFFGPGLEELIQHLAENDPNRYGTPPASKSVVEGLPDVSVTEELLASDSSQCAVCKDTFELGETAKQIPCKHIYHADCILPWLELHNSCPVCRYELPTDDPDYEQRARRGGGSAGAGAGSGAAPQMNWNMALGQGGSADSSGSGGGDNAQRRRFRVSLPWPFRQFVSSAETSNVGSANNDNSNSNSGNSGNNGGQSTSGNRGNPNFDSETRQEDLD 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02847 368 Pfam Zinc finger, C3HC4 type (RING finger) 203 244 - -
Pumo6g02847 368 Pfam zinc-ribbon 15 48 IPR039525 GO:0061630
Pumo6g02847 368 MobiDBLite consensus disorder prediction 321 368 - -
Pumo6g02847 368 MobiDBLite consensus disorder prediction 321 358 - -
Pumo6g02847 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 103 249 - -
Pumo6g02847 368 MobiDBLite consensus disorder prediction 255 302 - -
Pumo6g02847 368 FunFam E3 ubiquitin-protein ligase RING1-like 165 251 - -
Pumo6g02847 368 MobiDBLite consensus disorder prediction 282 299 - -
Pumo6g02847 368 SMART ring_2 204 244 IPR001841 -
Pumo6g02847 368 CDD RING-H2_RNF126-like 203 245 - -
Pumo6g02847 368 ProSiteProfiles Zinc finger RING-type profile. 204 245 IPR001841 -
Pumo6g02847 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 251 IPR013083 -
Pumo6g02847 368 SUPERFAMILY RING/U-box 187 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02847 Pumo-Chr6 68038662 68043701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02847 162 260 C3H Transcription Factor Family AT5G15820 55.556 1.60e-34 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02847 K11982 - gmx:100818686 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02847 6 68038662 68043701 Pumo6g02847 6 68038662 68043701 ECH