Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02817 ATGGCTTGGGTCAAAAAATCTCTCCATGCTGTGTCCTGGGCTGACGAAACCCTCGAAGATATCCACGTTGAACCTGAAAAGGCCATTGAAGACACTCATGCTGTCTCTACAATGTCTTGTGTTGATAAGGCCATGGAAGACACCCATGTTGTACATGATAAGGCACTTGAAGATTCCCATGCTGTACCTGAAAAGAGAATTGAAGTGATGGAAGAGATGTCCAAGAATGAAGGGCAACAAGAGAGCCAAATCCAGAAGAAAAGGAAGATTATCAATTCTGAAATGATTAGGAGAAAGAAGATTTTTGTTGGGGGCTTACCTTCTGGAATATCAGAGGAGGAGTTTAAGAATTATTTTGAGAGGTTTGGCACAATAACAGATGTGGTGGTGATGCAAGACAGTGTCACACACCGGCCTAGGGGATTTGGGTTCATCACATTTGATTCAGAAAAATCAGTTGAAGATGTTATGGTGAATAGCTTCCATGATTTGAATGGTAAACAAGTGGAGGTCAAGAGGGTGGTGCCAAAAGAGGAGAATAATGGTGCTTTTGATCAATTAAAATCCAATTATGGAAAAGGAACCTCTTTGAAAAGTTTTCCTTATTATGGTACCAATATCATTTCAACCCCTGCTAATGATCCTTTTCCTTGGTACCAAAATAATGGGCTATATTTCCATGCACCAAATCCCTATGGTTGGTACCCTGTGCTTGGTGCTTCTTGTCCTTGGTATGTGCCCATGGTACCCATGACTCAGCCATGTGCACAACCTTTTGGTTATTGTTTCCCAAGTTATCCATATGTTGGTGGGAGTGTTGGGGTGAATGTTAAGCTCTCAAGGAAGAAATTTAACTGA 858 0.4138 MAWVKKSLHAVSWADETLEDIHVEPEKAIEDTHAVSTMSCVDKAMEDTHVVHDKALEDSHAVPEKRIEVMEEMSKNEGQQESQIQKKRKIINSEMIRRKKIFVGGLPSGISEEEFKNYFERFGTITDVVVMQDSVTHRPRGFGFITFDSEKSVEDVMVNSFHDLNGKQVEVKRVVPKEENNGAFDQLKSNYGKGTSLKSFPYYGTNIISTPANDPFPWYQNNGLYFHAPNPYGWYPVLGASCPWYVPMVPMTQPCAQPFGYCFPSYPYVGGSVGVNVKLSRKKFN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02817 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 176 IPR000504 GO:0003723
Pumo6g02817 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 158 IPR000504 GO:0003723
Pumo6g02817 285 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 39 200 - -
Pumo6g02817 285 CDD RRM2_Hrp1p 100 177 - -
Pumo6g02817 285 SMART rrm1_1 100 172 IPR000504 GO:0003723
Pumo6g02817 285 SUPERFAMILY RNA-binding domain, RBD 93 194 IPR035979 GO:0003676
Pumo6g02817 285 Gene3D - 59 193 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02817 Pumo-Chr6 67570815 67572278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02817 96 157 C2H2 Transcription Factor Family AT2G19380 32.258 2.79e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02817 K14411 - gmx:102670015 343.969