Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02807 ATGTCATCCTCAACTTCAACACCTCAAGTCATCACCTGCAAAGCTGCAGTGGCATGGGGAGCTGGGGAATCACTGGTGATGGAGGAAGTGGAAGTGAGTCCTCCCCAACCAATGGAGATTAGGATTAAGGTTGTCTCCACCTCTCTCTGTCGCAGTGATCTCACCGCTTGGGAATCTCATGCCATATTTCCTCGCATATTTGGCCACGAAGCATCAGGGATTGTTGAGAGTGTGGGATTGGGAGTGACTGAATTCAAAGAGAGGGACCATGTGCTAACAGTATTCATCGGAGAATGCATGGCATGCAGGCAGTGCACATCTGGAAAAAGTAACACTTGTCAAGTTTTGGGATTGGAAAGGAGGGGTTTAATGCATAGTGATCAGAAGACACGCTTCTCAGTAAAAGGGAAGCCTGTTTACCATTATTGTGCAGTTTCAAGTTTCAGTGAATATACAGTAGTCCATTCTGGATGTGCAGTGAAAGTCAGCCCCCTTGCACCTCTTGAGAAAATATGCCTTCTGAGCTGTGGGGTTGCTGCAGGTCTGGGAGCAGCATGGAATGTTGCAGATGTGTCAAAAGGATCAACTGTGGTGATTTTTGGTCTTGGAACTGTTGGCCTATCTGTTGCTCAAGCTTCCAAACTAAGAGGTGCATCTCGAATAATTGGTGTGGACAACAATCCACAGAAGTGTGAAAATGCTAAAGCTTTTGGGGTTACTGAAGTTGTTGACCCGAATTCCTATAAAGAACCTATTGCTCAGGTTATTAAGCGCATTACTGATGGTGGGGCAGATTTCTCTTTTGAATGTGTTGGTGACACTGATATGATAACCACTGCATTGCAGTCCTGCTGTGATGGATGGGGTTTGACTGTAACACTTGGTGTGCCAAAGGTGAAGCCTGAGATGTCAGCTCATTATGGACTACTCCTAATGGGAAGAACATTGAAAGGATCTCTATTTGGAGGATGGAAACCAAAATCTGATCTGCCTTCATTAGTAGAGAAGTATGTCAACAAGGAAATTCAGATTGATGACTACATAACACACAATTTGCCATTTGATGACATTAACAAAGCTTTCAATCTCATGAAGGAAGGAAAATGTCTGCGTTGCGTTATCCACATGCCAAGATATCATTGA 1143 0.4418 MSSSTSTPQVITCKAAVAWGAGESLVMEEVEVSPPQPMEIRIKVVSTSLCRSDLTAWESHAIFPRIFGHEASGIVESVGLGVTEFKERDHVLTVFIGECMACRQCTSGKSNTCQVLGLERRGLMHSDQKTRFSVKGKPVYHYCAVSSFSEYTVVHSGCAVKVSPLAPLEKICLLSCGVAAGLGAAWNVADVSKGSTVVIFGLGTVGLSVAQASKLRGASRIIGVDNNPQKCENAKAFGVTEVVDPNSYKEPIAQVIKRITDGGADFSFECVGDTDMITTALQSCCDGWGLTVTLGVPKVKPEMSAHYGLLLMGRTLKGSLFGGWKPKSDLPSLVEKYVNKEIQIDDYITHNLPFDDINKAFNLMKEGKCLRCVIHMPRYH 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02807 380 Gene3D - 16 371 - -
Pumo6g02807 380 CDD alcohol_DH_plants 11 375 - -
Pumo6g02807 380 Pfam Zinc-binding dehydrogenase 205 328 IPR013149 -
Pumo6g02807 380 Pfam Alcohol dehydrogenase GroES-like domain 38 161 IPR013154 -
Pumo6g02807 380 FunFam Uncharacterized protein 320 371 - -
Pumo6g02807 380 SUPERFAMILY GroES-like 7 186 IPR011032 -
Pumo6g02807 380 PANTHER ALCOHOL DEHYDROGENASE 9 374 - -
Pumo6g02807 380 FunFam Alcohol dehydrogenase 6 16 197 - -
Pumo6g02807 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 167 340 IPR036291 -
Pumo6g02807 380 Gene3D - 181 319 - -
Pumo6g02807 380 FunFam S-(hydroxymethyl)glutathione dehydrogenase 181 319 - -
Pumo6g02807 380 SUPERFAMILY GroES-like 327 375 IPR011032 -
Pumo6g02807 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02807 Pumo-Chr6 67410012 67415167 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02807 16 113 Monolignol Biosynthesis Gene Families AT2G21730 36.190 2.03e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02807 K00001 - gmx:100819938 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02807 6 67410012 67415167 Pumo6g02807 6 67410012 67415167 ECH