Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02806 ATGACAATACCAATTATTCAATCATGTATGAAATTTCCATGTCACATTTTCCTGCTTTTGTTCTTCTTGCTTGGTCACACAAGCTCACAATCTTTGTATGATCAAGAACATTCAGTTTTGCTTAACATAAAGCAATACTTCCAAGACCCTCCTTTCCTCTCCCACTGGAATTCAACTTCCTCTCACTGTTCCTGGCCAGAGATCACATGCACCACTGACTCAGTCACTTCCCTCACTCTCTCCCAATCCAACATCAACAAAACAATACCTCCCTTCATCTGTGGCCTCACCAACCTCACACACCTTGACTTCAGCTTCAACTTCATCCCTGGTGACTTCCCCACACCCCTCTACAACTGCTCCAAGTTGGAGTACCTAGACCTTTCTGGGAACAACTTTGATGGCAAGGTTCCTCATGATATTGACCAATTGGGTGCTAATTTGCAATATCTCAACCTTGGTTCCACCAACTTCCATGGTGATGTTCCAGCTAGTATTGGAAAGTTGAAGCAATTGAGACAACTTATGCTTCAGTATTGCTTATTGGATGTCACTGTTGCTGCTGAGATTGATGACTTGTCCAACCTTGAGTACTTGGACTTGTCCTCTAACTTCATGTTTCCTAAATGGAAGTTGCCTTGGAACTTGACCAAGTTCAGCAAATTGAAGGTGCTTTATCTGTATGGCACCAACTTGGTTGGGGAAATTCCTGAGAGCATTGGAGATATGGTGGCCTTGGAGAAGCTGGATATGTCAAATAATAGCTTAACTGGAGGAATTCCAAGTGGTTTGTTCATGCTCAAGAATCTGACCTTACTGCGTCTTTTTGCAAATAGTCTTTCTGGGGAGATACCAAGTGTGATTGAGGCATTGAACTTGGTCTATCTTGATCTTGGAAGGAACAATCTTACAGGGAAAATACCAGATGATTTCGGAAAGCTCCAACAGTTGTCATGGTTGGCTTTGTCTATGAATAGCTTGTCAGGTGTGCTACCAGAAAACTTAGGCAATCTTCCAGCTCTCAAGGATTTTCGCGTTTTTATCAACAAATTATCAGGTAATCTTCCTCCTGATTTTGGCCGTTACTCAAAGCTTGAAACCTTTTTGATTGCATCTAATAGTTTCACTGGGAAGTTACCGGAGAACTTGTGCTATCATGGGATGTTACTTAACTTGTCTGTTTATGACAATAACCTGAGTGGTGAGTTGCCAGAATCACTAGGAAATTGCAGTGGTTTATTGGATCTGAAAATTGAGAATAATGAGTTTTCTGGTAACATTCCTGGTGGTCTCTGGACATCTTTCAATTTGTCAAATTTCATGGTGAGCCGTAATAAGTTCACTGGTGTGCTTCCTGAAAGGCTATCTTGGAATATTTCAAGGTTTGAGATAAGTTACAATCAGTTTTCTGGTGGAATTCCAAGTGGAGTATCATCATGGACTAATTTGGTAGTGTTTGATGCTAGTAAGAACAACTTCAATGGAAGTATTCCACAAGGGCTTACAGCTCTTCCTAAGTTAATAACCTTGTTGCTTGATCAGAACCAACTCACTGGGCCACTTGCATCAGATATAATATCATGGAAATCCTTAGTAACTCTAAATTTGAGCCAAAACCAACTCTCTGGACAAATCCCTCATGCAATTGGTCAGTTACCTGTCCTTAGTCAACTTGATCTATCAGAAAATGAATTCTCTGGCCAAGTTCCTTCTCTACCCCCTACACTCACCAATCTCAATTTGTCTTTTAATCATTTGACTGGGAGGATTCCAAGGGAATTTCAAAATTCTGTGTATGCTAGTAGCTTTTTGGGCAATTCTGGTCTTTGTGCTGATACCCCAGCACTGAACCTTACCTTATGCAATTCTGGCCTTCAAAGAACAAACAAAGGCTCATCTTGGTCTATTGGTTTGGTTATAATTTTGGTGGTAGTAGCCTTGTTACTGGCCCTTTTGGCATCACTCTTGTTTATTAGATTTCGCAGAAAAAGAAAGCAAGGATTGGTTAACTCATGGAAGCTCATTTCCTTTGAGAGGCTTAATTTCACAGAATCAAGCATTGTCTCATCAATGACTGAACAAAACATTATTGGTAGTGGTGGATATGGTACAGTATACCGCATTGATGTTGCTTCAGGCTCTGTTGCTGTGAAAAAGATTTATAATAACAGAAAGTTAGACAAGAAGCTTGAGAACTCTTTCCGCGCAGAAGTTAGAATACTGAGCAATATTCGTCATACCAACATTGTGAGGTTGATGTGTTGTATCTCTAATGAGGATTCTATGCTCCTTGTGTATGAGTATCTGGAAAATCACAGCCTAGATAAGTGGCTGCACAAGAAGGTTAAGTCAGGTTCAGTCAGTAAAGTGGTGCTTGATTGGCCAAAGAGGTTGAAAATAGCCATTGGGGTTGCTCAAGGTTTGAGCTACATGCACCATGACTGTTCACAACCTGTTGTTCATAGAGATATAAAAACGAGCAACATCCTTTTGGATGCTCAATTCAATGCAAAAGTTGCTGATTTTGGACTAGCTAAGATGTTAATCAAGCCAGGGGAACTTAACACCATGTCAGCTGTGATTGGCTCATTTGGCTATATTGCTCCAGAATATGCTCAAACGACCCGAGTTAGTGAAAAGATTGATGTGTTCAGCTTTGGGGTAGTCCTATTGGAACTGACAACTGGTAAAGAAGCAAATTATGGAGACCAACACTCATCTCTTTCAGAGTGGGCGTGGCGCCACATTCTGATTGGAGGCAATGTTGAAGAATTGCTAGACAAAGATGTCATGGAAGCCATTTACTCAGATGAAATGTGCACTGTTTTCAAACTTGGGGTCATGTGCACTGCTACACTGCCTGCAAGTAGGCCTTCCATGAGGAAGGCCCTACAAATATTGCAAAGCTTAGGAGAACCATTTGCTTATGGAGATCAGAAGAATTTTGGCCACTACTATGATGCTATTCCCCTTCTTAAGGGTTCAGAAAAGGAAACTAGGTTGGATGTTGTTGATGATAGTTAA 3024 0.4091 MTIPIIQSCMKFPCHIFLLLFFLLGHTSSQSLYDQEHSVLLNIKQYFQDPPFLSHWNSTSSHCSWPEITCTTDSVTSLTLSQSNINKTIPPFICGLTNLTHLDFSFNFIPGDFPTPLYNCSKLEYLDLSGNNFDGKVPHDIDQLGANLQYLNLGSTNFHGDVPASIGKLKQLRQLMLQYCLLDVTVAAEIDDLSNLEYLDLSSNFMFPKWKLPWNLTKFSKLKVLYLYGTNLVGEIPESIGDMVALEKLDMSNNSLTGGIPSGLFMLKNLTLLRLFANSLSGEIPSVIEALNLVYLDLGRNNLTGKIPDDFGKLQQLSWLALSMNSLSGVLPENLGNLPALKDFRVFINKLSGNLPPDFGRYSKLETFLIASNSFTGKLPENLCYHGMLLNLSVYDNNLSGELPESLGNCSGLLDLKIENNEFSGNIPGGLWTSFNLSNFMVSRNKFTGVLPERLSWNISRFEISYNQFSGGIPSGVSSWTNLVVFDASKNNFNGSIPQGLTALPKLITLLLDQNQLTGPLASDIISWKSLVTLNLSQNQLSGQIPHAIGQLPVLSQLDLSENEFSGQVPSLPPTLTNLNLSFNHLTGRIPREFQNSVYASSFLGNSGLCADTPALNLTLCNSGLQRTNKGSSWSIGLVIILVVVALLLALLASLLFIRFRRKRKQGLVNSWKLISFERLNFTESSIVSSMTEQNIIGSGGYGTVYRIDVASGSVAVKKIYNNRKLDKKLENSFRAEVRILSNIRHTNIVRLMCCISNEDSMLLVYEYLENHSLDKWLHKKVKSGSVSKVVLDWPKRLKIAIGVAQGLSYMHHDCSQPVVHRDIKTSNILLDAQFNAKVADFGLAKMLIKPGELNTMSAVIGSFGYIAPEYAQTTRVSEKIDVFSFGVVLLELTTGKEANYGDQHSSLSEWAWRHILIGGNVEELLDKDVMEAIYSDEMCTVFKLGVMCTATLPASRPSMRKALQILQSLGEPFAYGDQKNFGHYYDAIPLLKGSEKETRLDVVDDS 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02806 1007 SMART serkin_6 691 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g02806 1007 Gene3D Ribonuclease Inhibitor 148 209 IPR032675 -
Pumo6g02806 1007 Gene3D Ribonuclease Inhibitor 210 351 IPR032675 -
Pumo6g02806 1007 Gene3D Transferase(Phosphotransferase) domain 1 769 981 - -
Pumo6g02806 1007 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 392 969 - -
Pumo6g02806 1007 Pfam Leucine rich repeat N-terminal domain 35 70 IPR013210 -
Pumo6g02806 1007 Gene3D Ribonuclease Inhibitor 352 627 IPR032675 -
Pumo6g02806 1007 SUPERFAMILY RNI-like 260 600 - -
Pumo6g02806 1007 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 189 289 - -
Pumo6g02806 1007 Gene3D Ribonuclease Inhibitor 34 147 IPR032675 -
Pumo6g02806 1007 FunFam Kinase family with leucine-rich repeat domain-containing protein 769 982 - -
Pumo6g02806 1007 Pfam Leucine Rich Repeat 576 596 IPR001611 GO:0005515
Pumo6g02806 1007 Pfam Leucine Rich Repeat 292 314 IPR001611 GO:0005515
Pumo6g02806 1007 Pfam Leucine Rich Repeat 246 263 IPR001611 GO:0005515
Pumo6g02806 1007 ProSiteProfiles Protein kinase domain profile. 691 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g02806 1007 FunFam Receptor-like protein kinase HSL1 isoform A 297 621 - -
Pumo6g02806 1007 FunFam Receptor-like protein kinase HSL1 isoform A 33 183 - -
Pumo6g02806 1007 ProSitePatterns Protein kinases ATP-binding region signature. 697 719 IPR017441 GO:0005524
Pumo6g02806 1007 Gene3D Phosphorylase Kinase; domain 1 670 768 - -
Pumo6g02806 1007 FunFam Receptor-like protein kinase HSL1 671 768 - -
Pumo6g02806 1007 SUPERFAMILY RNI-like 66 352 - -
Pumo6g02806 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 819 831 IPR008271 GO:0004672|GO:0006468
Pumo6g02806 1007 Pfam Leucine rich repeat 74 133 IPR001611 GO:0005515
Pumo6g02806 1007 Pfam Protein kinase domain 693 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pumo6g02806 1007 SUPERFAMILY Protein kinase-like (PK-like) 685 967 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02806 Pumo-Chr6 67209982 67213740 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02806 31 1006 Receptor kinase-like Gene Family AT5G25930 51.463 0.0 957
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pumo6g02806 Pkinase 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02806 - - gmx:100813894 1789.24