Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02794 ATGACACCAACTGGTGAAGGAGCTGAGAAGATGGATGCAGATGGTGAAAACTGCAGTGATTATGAGCATGACATAGAAAATGAAGGTTTGTGGGATGGGAATGAAGAAATTGGAGGGTACTGGTCAGGGATATCTGACAGAAACATGGCTCATACAAAGCCACTTCTTGTGAAGAGGACTAACACCACCTCCCAGATTGCTATAGTTGGTGCCAACCTCTGCCCTATTGAAAGCCTTGACTATGAGATTTTTGACAATGAAATATTGAAGGACTGGAGGTCCAGGAAGAAGGTTCAGATAATCCAGTATGTGGTGCTTAAGTGGGGATTTGCTCTTCTTATTGGATTAGGTACTGGATTGGTTGGCTTCTTTAACAGTTTTGCAGTTGAGAACATAGCTGGTTTCAAGCTGCTTATGACCACGAGTCTCATGTCTAAACACAGATATCTTGATGCTTTTTTAGCATATGCTGGTGCGAATATGTGTTTAGCAGCAGCAGCTGCTGCACTTTGTGCTTTCATTGCTCCAGCAGCTGCAGGCTCTGGCATTCCAGAGGTAAAAGCATATCTCAATGGCGTGGATGCCCACTATATATTGGCTCCAAGCACCCTTTTTGTAAAGATATTTGGTTCCATCCTTGGAGTTTCTGCTGGATTTGTGGTGGGCAAAGAGGGGCCTATGGTACATACAGGTGCATGCATAGCTTCTTTATTGGGGCAGGGTGGATCTCGCAAGTATCACTTGACTTGCAGTTGGCTTAGATATTTCAAAAATGACCGAGACCGGCGCGACATGATTACTTGTGGTGCAGCTGCTGGTGTTGCTGCTGCCTTTCGTGCACCAGTAGGTGGTGTCCTCTTTGCCCTTGAAGAGGCAGCTTCATGGTATCTATTTCTGGTCAAATTACTCTTTCTCTCCCAACTTCATGCATGGTGGCGGAGTGCTCTTCTTTGGAGGACATTTTTTACAACAGCAGTGGTTGCTATTGTTTTAAGAGTTGCAATTCAGTTTTGTGCCACAGGGAAATGTGGGTTATTTGGGGAAGGTGGTCTGATAATGTATGATGTTAGTTCAGCCAATATAACATATAGTGCTAGTGGGATATTTGCAGTACTACTTTTGGGAGCCATTGCTGGAATTCTTGGAAGCATATATAATTACCTTGTGGATAAGGTTGTTCGGACATACAGCATCATCAATGGAAAAGGTGCATTTTACAAAATCTCTCTTGTTGTCACAATTGCTTTTTTGACATCATGTTGTTATTATTTCTTGCCATGGATTGCATACTGCATTCCCTGCCCTTCTAATTCAACAGTGATCTGTCCATCTGTTGATGAGTCTGGAGAATACAAAAGCTTTCAATGCCCACCAGGCTACTACAATGATCTTGCTTCCCTCTTTCTAAACACCAATGATGATGCTATTCGCAATCTATTCAGCCCCAGGATAATCAAAGAGTTTCATATTTCCAGTTTGTTTATCTACTTTGCTACTATTTACTGTCTTGGGATAATCACTTATGGCATTGCTATTCCATCCGGGCTCTTCATTCCTGTGATACTTGCTGGTGCTGCCTATGGCCGGCTTTTCGGCCGGCTCTTTGAAACGATCACCAAACTCGACAGAGGACTCTTTGCCCTACTTGGAGCTGCTTCCTTCCTTGGTGGCACCATGAGAATGACAGTGTCTCTTTGTGTCATATTGCTTGAGCTCACTAATGATCTCTTGTTACTTCCACTTGTGATGTTGGTCTTGTTGGTCTCAAAAACTGTGGCTGACAGCTTCAACAAGGGTGTCTATGATCAAATACTTAAGATCAAAGGACTTCCTTATTTGGAGGCTCATGCAGAACCTTACATGAGGAATTTAGTTACACGCGATGTCGTTTCAGGTCCATTGATAACCTTTTCTAGCATTGAAAAGGTTGGTAACATATTGCATGCTTTGAATTCTACAGGGCATAATGGGTTTCCTGTCATTGATGAACCACCTTTCTCGGATGCACCAGAGTTATGTGGACTTGTATTGAGGTCTCATTTACTAGTGTTACTGAAGGAGAAGATTTTTTTAAGAGATAGGGGTTTTGCAAATCAAAGGATCTTCCAAAGAATTTCTACTTTGGATTTTGGAAAGGCAGGATCAGGAAAGGGGATCAAACTAGAGGATCTTGATATCCAAGAGGAAGAGATGGATATGTATGTTGATCTCCATCCCATAACTAATGCATCCCCTTACACTGTGGTTGAGACAATGTCACTTGCCAAAGCTGCTATTCTTTTCCGCCAACATGGACTCAGGCACATGTGTGTTGTTCCAAAGAGCCAAGGGAGACCTCCAGTTGTTGGGATTTTAACACGCCATGATTTTATGCCAGAGCATGTTTTGGGACTTTACCCTGATATCAAGCTACACAAACGGCAATGA 2427 0.4285 MTPTGEGAEKMDADGENCSDYEHDIENEGLWDGNEEIGGYWSGISDRNMAHTKPLLVKRTNTTSQIAIVGANLCPIESLDYEIFDNEILKDWRSRKKVQIIQYVVLKWGFALLIGLGTGLVGFFNSFAVENIAGFKLLMTTSLMSKHRYLDAFLAYAGANMCLAAAAAALCAFIAPAAAGSGIPEVKAYLNGVDAHYILAPSTLFVKIFGSILGVSAGFVVGKEGPMVHTGACIASLLGQGGSRKYHLTCSWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWYLFLVKLLFLSQLHAWWRSALLWRTFFTTAVVAIVLRVAIQFCATGKCGLFGEGGLIMYDVSSANITYSASGIFAVLLLGAIAGILGSIYNYLVDKVVRTYSIINGKGAFYKISLVVTIAFLTSCCYYFLPWIAYCIPCPSNSTVICPSVDESGEYKSFQCPPGYYNDLASLFLNTNDDAIRNLFSPRIIKEFHISSLFIYFATIYCLGIITYGIAIPSGLFIPVILAGAAYGRLFGRLFETITKLDRGLFALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLVSKTVADSFNKGVYDQILKIKGLPYLEAHAEPYMRNLVTRDVVSGPLITFSSIEKVGNILHALNSTGHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKEKIFLRDRGFANQRIFQRISTLDFGKAGSGKGIKLEDLDIQEEEMDMYVDLHPITNASPYTVVETMSLAKAAILFRQHGLRHMCVVPKSQGRPPVVGILTRHDFMPEHVLGLYPDIKLHKRQ 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02794 808 Gene3D - 614 796 IPR046342 -
Pumo6g02794 808 CDD CBS_pair_voltage-gated_CLC_euk_bac 627 793 - -
Pumo6g02794 808 PRINTS Plant CLC chloride channel signature 464 480 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo6g02794 808 PRINTS Plant CLC chloride channel signature 308 316 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo6g02794 808 PRINTS Plant CLC chloride channel signature 340 347 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo6g02794 808 PRINTS Plant CLC chloride channel signature 82 90 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo6g02794 808 PRINTS Plant CLC chloride channel signature 322 332 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pumo6g02794 808 PRINTS Chloride channel signature 176 193 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo6g02794 808 PRINTS Chloride channel signature 512 532 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo6g02794 808 PRINTS Chloride channel signature 207 226 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo6g02794 808 PRINTS Chloride channel signature 544 560 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo6g02794 808 PRINTS Chloride channel signature 271 290 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo6g02794 808 PRINTS Chloride channel signature 562 581 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo6g02794 808 PRINTS Chloride channel signature 600 614 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo6g02794 808 ProSiteProfiles CBS domain profile. 740 802 IPR000644 -
Pumo6g02794 808 FunFam Chloride channel ClC3 99 430 - -
Pumo6g02794 808 Pfam CBS domain 744 790 IPR000644 -
Pumo6g02794 808 Pfam Voltage gated chloride channel 164 594 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pumo6g02794 808 SUPERFAMILY Clc chloride channel 90 616 IPR014743 -
Pumo6g02794 808 Gene3D Clc chloride channel 98 613 - -
Pumo6g02794 808 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 48 796 - -
Pumo6g02794 808 SUPERFAMILY CBS-domain pair 617 791 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02794 Pumo-Chr6 66349876 66359408 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02794 22 802 Ion Channels AT5G49890 70.229 0.0 1068
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02794 K05016 - gmx:100809070 1396.72