Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02757 ATGAGGATAGCTACCAAAATGAGTTTGACTGCAAATATGACTGGCTGCTGCATGGTACCTGAACATAAGTTTGAGGACAAAAGTTATGCTGTTAATTCATTTCATCTTTTTGATGTGCCGTTAGCTTTTTGGTTGTTCTTGGTGGCAAGCTCTTACTTTCTCTTGAGCAAAAATGTCAATGTTTTTGGTGGTTGTAGAGGAAAACATGCACATAAAGTTTCTTCATCTGACAGAACTATCTCAAATGCAAGCAAAGAGAATGATGCAACTGCTGCAAATGATACGTTTAGCTGTTCTCATAGAATTTCATCCAATAACAGCTGGAGTGAGCTATGCACCAAGTGTGATGCTTACTGTGGGATTTTAGATTTTGACAAAGCAAGTTACATGCATTCTTTAGTCAGTCTTGAAGATGAAGACTTTGAGTGGCTCTCAGATTCAATGCCTTGTGGACTTTCATATGAGAACCCTTCAACTCCTCTTAGCTACAAGTGTGATGCTTACTATGAGATTTCAGATTTTGAGCAAGTGAGTTACATGCATTCTTTACTCAGTCTTGATGATGAAGATTCTGAGTGGCTTTCAGATTCGAAGTCTTTTGGATGTTCTTCAGAGAACCCTTCAACTCCTTTTAGCTATAAGTGTAATGCTTTCTCTCAGATTTCAGCTTTGGAGAAAGCAAGTTACATGCATTCTTTACTCAGTCTTGAAGATGAAGACACTGAGTGGCTCTCAGATTCGATGTCTTTTGGACGTTCATCTGAGGAGCCTTCAACTCCTCTTAACTACAAGTGTGATGCTTACTATGAGATTTCAGATTTTGACAAAGCAAGTTACATGCATTCTTTACTTAGTCTTGAAGATGAAGACTCTCAGTGGCTCTTAGATTCGAAGCCTTATGGATGTTCATCTGAGAACCCTTCAACTCCTATTAGCTACAAGGTTGATGCTTCTGAGATTTCAGATTTGGACAAAGAAAGTTACTTGCAATCTTTACTCAGTCTTGAAGATGAAGACTATGAGTGGCTCTCAGACTCGAAGCCTTTTGGAGGTTCATCTGAGAACCCTTCAACTCCTCTTAGCTACAAGTTTGATGCTGCTTCTGAGATTTCAGATTTTGACAAAGAAAGTTACTTGCATTCTTTTCTCAGTCTTGAAGATGAAGACTCTGAGTGGTTCTCAAATTCAAAGTCTTTTGGATGTTCATCTGAGAGCATTTCAACTCCTCTTAGCTACAAGTTTGATGCTTCTTCTGAGATTTCAGCTTTGGACAAAGCAAGTTACATGCTTTCTTTACTCAGTCTTGAAGATGAAGACTCCGAGTGGCTCTCAGATTCAAAGTCTTTTGGATGCTCATCTGAGAACCCTTCAACTCCTCTTAGTAACAAGTGTGATGCTTTTTCTGATATTTCAGATTTGGACAAAGTAAATTACATGCATTCCTTAATCAGCCTTGAAGATGAAGACTCTGACTGGCTCTCAGATTCTAAGTCTTATGGATGTTCATCTGAAAATTCAACTCCTCCTAGCTACAAGTTTGATGCTTCCTATGAGATTTCAGATTTGGACAAAGCAAGTTACTTGCATTCCCTACTCATTCTTGAAGATGAAGACTTTGAGTGGCTCTCAGATTCGAGTAGTTGGAGTATCGTGGTCCCTCCTTCAGTGTCTACTAGTTCCTCATTCACTGGAGTACACTGTGGCAACCCAAAAGACAATAATATTTCAGTGGAGCATCTATTAGAAACTGCAGATGTAGAAGAAGAGTTCAATGCTGATGAACCACTTTATCTACATAGGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAACAAGAGGGAGTGTATGATGAAACTGAAAGAAGAAGAGCAATGGCAAAGAATTCGTTGGAGAGGTACACACATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAAAAAGCTCTAGCAGATCTACACCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACACACAGTGCCAGCCTGAATCACAGCTTAAGTTCATAACGGAGTCCTGGTTACAGATAGTTGAATGCAGGAGGGTGCTGAAATGGACATATGCATATGGCTACTATTTACCCGAGCATGAACATGCTAAAAAACAGTTCTTTGAGTACTTACAAGGTGAGGCAGAATCTGGTTCGGAGAGACTTGATCAATGTGCTGAAAAGGAACTACAGCTATTCCTCAATGCTGATGGCCCATCTAGAGAATTCAATGACTTTCGTACCAAACTAGCTGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTGAGGGCATTAGAGAATGGTTTAGCTGATGTGGATAGTAATGGAGCTGCTTCTAGCAAAGCAACGAGCTCAAAAAATGCTGCAGGGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAAGCGACTATTCGAACTATCATATCCAGCAGAATGACTGATCATAATCATTGGTCTTGTGAGCATTGTACTTATGCAAATGTTAGGTCTGCCACCACATGCCAAATGTGCAATCAACAGCGTCGATGA 2598 0.4042 MRIATKMSLTANMTGCCMVPEHKFEDKSYAVNSFHLFDVPLAFWLFLVASSYFLLSKNVNVFGGCRGKHAHKVSSSDRTISNASKENDATAANDTFSCSHRISSNNSWSELCTKCDAYCGILDFDKASYMHSLVSLEDEDFEWLSDSMPCGLSYENPSTPLSYKCDAYYEISDFEQVSYMHSLLSLDDEDSEWLSDSKSFGCSSENPSTPFSYKCNAFSQISALEKASYMHSLLSLEDEDTEWLSDSMSFGRSSEEPSTPLNYKCDAYYEISDFDKASYMHSLLSLEDEDSQWLLDSKPYGCSSENPSTPISYKVDASEISDLDKESYLQSLLSLEDEDYEWLSDSKPFGGSSENPSTPLSYKFDAASEISDFDKESYLHSFLSLEDEDSEWFSNSKSFGCSSESISTPLSYKFDASSEISALDKASYMLSLLSLEDEDSEWLSDSKSFGCSSENPSTPLSNKCDAFSDISDLDKVNYMHSLISLEDEDSDWLSDSKSYGCSSENSTPPSYKFDASYEISDLDKASYLHSLLILEDEDFEWLSDSSSWSIVVPPSVSTSSSFTGVHCGNPKDNNISVEHLLETADVEEEFNADEPLYLHRLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRRAMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITESWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGSERLDQCAEKELQLFLNADGPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLADVDSNGAASSKATSSKNAAGSSKGRGGRGKATIRTIISSRMTDHNHWSCEHCTYANVRSATTCQMCNQQRR 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02757 865 SMART zf_4 839 863 IPR001876 -
Pumo6g02757 865 Gene3D - 600 796 - -
Pumo6g02757 865 Pfam Ariadne domain 632 793 IPR045840 -
Pumo6g02757 865 ProSiteProfiles Zinc finger RanBP2 type profile. 837 865 IPR001876 -
Pumo6g02757 865 ProSiteProfiles Forkhead-associated (FHA) domain profile. 248 315 IPR000253 GO:0005515
Pumo6g02757 865 MobiDBLite consensus disorder prediction 798 825 - -
Pumo6g02757 865 MobiDBLite consensus disorder prediction 798 815 - -
Pumo6g02757 865 PANTHER T20M3.17 PROTEIN 212 315 - -
Pumo6g02757 865 ProSitePatterns Zinc finger RanBP2-type signature. 841 860 IPR001876 -
Pumo6g02757 865 SUPERFAMILY Ran binding protein zinc finger-like 837 864 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02757 Pumo-Chr6 65894657 65899768 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02757 567 864 ARIADNE family AT1G65430 64.765 5.09e-126 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02757 K11968 - pvu:PHAVU_005G152200g 612.453