Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02754 ATGGAGGTTTGCAAGATTGTGGAAGGTCAAAGGTACTTAAATGTGCTGAATTGGAGACAGACTGATGCTTTGATGAAAACTACATACCAGCGTCCTCTCAAAAGGGAGCGTGATATCATGACTACTGTCTGCAACAATGCCTGTCATGAAGATCCTTATGCTAAAGAGTTTGGAATCAAAATTAGTGAGAATCTTGCTCAAGTCGAAGCTCGCATCCTTCCTCCACCCTTGCTCAAATATCATGATACGGGCATAGAGAAGGTTTGTCGTCCTCAAGCTGGGAAATGGGATATGATAAACAAGAAAGTGATTAATGGGGGGAAAGTTAACAACTGGTTCTCCATAAACTTTTCAAGTAATGTTCAAGATAGTGACGCACGTTGCTTTTGTGATGCACTTGCCCAGTCCTGTAGTATATCTGGCATGGAATTTAATCCTGAGCCAGTAGTTCCCCCAGTCAATGCTTGCCCTGATCAAGAAGCCAGCAGAAAACTGCCTCGGGGACAGGAGCTTGATTTGCTCATTGCTATTTTGCCTGATAATAGTGGATTTCTTTATGGTGAACTCAAACGTATATGTGAGACAGATCTTGGGCTTGTTTCACAATGTTTCTCAACTAAGAAAGTCTTAAAAATGAGCAAGTTGGACATTTCAAGCGTTGCTTTGAAGATTAATGTCAAGGTTGGAGGAAGGAACACTGTACTTGTTGATGCACACTCACTACGCTGCGTAGCAGATAATGTGAGTCATCCACATGCCGGGGAAGATTCAAACCCATCAATAGCCACCGTTGTGGCTTCTCAAGAAGATTTTATCACGTACGCAAGTTTAGTATCTTCTCAACTGCCAAACCAACAAATAATCCAAAATCTCTTCAAAGAATGGAAAAATCCAGTAACAGGCACAGTAGAGTATGGCAGAATGATCAGGGAACATGTTAAATCTTTTGAGAGGAACACTGGACAAATGCCACAGCGCATCATATTTTACAGGGATGGTGTGGGTGAGGAGGCGTTTAATCAACTTCTAGAGTTTGAGCTTGTTGCCATTCGAAAGGCTTGTGCATCCCTTGAACCCAATTATCAGCCTGATGTGACTTTTGTGGTGGTTCAAAAGCGTCATCACACAAGGCTCTTTGCTGGTAATCATCATGACAAGAGTTCTGTTGACAAGAGTGGCAATATATTGCCTGGCACTGTTGTAGACTCCAAAATCTGTCATCCAACCTTCCATCCTGGAGTGCAGGGTACTACAAGCCGTCCAACTCGCTACTGTGTGTTGCTGGATGAGAACAATTTCACTGCTGATGCTTTGCAAACTTTAACCTATGTGCTACACGTAATGCCCCCTGCATGTTATGCCCACTTGGCTGCATACAGGGCAAGGTTTTACATGAAATCTGAGACTTCGGAGACAAGTGGTGTTGGTGCTGGCTGTGGAATGGGCGGTGGTGCAGGGTGTAGCATCCGTGCACCTGGTGCTAATGTTGCTGTGAGACCATTGCCTGACCTGAAAGAGAATGTCAAGAGGCTTATGTTGTATTGCTAA 1548 0.438 MEVCKIVEGQRYLNVLNWRQTDALMKTTYQRPLKRERDIMTTVCNNACHEDPYAKEFGIKISENLAQVEARILPPPLLKYHDTGIEKVCRPQAGKWDMINKKVINGGKVNNWFSINFSSNVQDSDARCFCDALAQSCSISGMEFNPEPVVPPVNACPDQEASRKLPRGQELDLLIAILPDNSGFLYGELKRICETDLGLVSQCFSTKKVLKMSKLDISSVALKINVKVGGRNTVLVDAHSLRCVADNVSHPHAGEDSNPSIATVVASQEDFITYASLVSSQLPNQQIIQNLFKEWKNPVTGTVEYGRMIREHVKSFERNTGQMPQRIIFYRDGVGEEAFNQLLEFELVAIRKACASLEPNYQPDVTFVVVQKRHHTRLFAGNHHDKSSVDKSGNILPGTVVDSKICHPTFHPGVQGTTSRPTRYCVLLDENNFTADALQTLTYVLHVMPPACYAHLAAYRARFYMKSETSETSGVGAGCGMGGGAGCSIRAPGANVAVRPLPDLKENVKRLMLYC 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02754 515 Gene3D - 72 237 - -
Pumo6g02754 515 FunFam Argonaute 10 72 236 - -
Pumo6g02754 515 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 1 467 - -
Pumo6g02754 515 Pfam Argonaute linker 2 domain 35 80 IPR032472 -
Pumo6g02754 515 SUPERFAMILY PAZ domain 1 43 IPR036085 GO:0005515
Pumo6g02754 515 ProSiteProfiles Piwi domain profile. 173 445 IPR003165 GO:0003676
Pumo6g02754 515 SUPERFAMILY Ribonuclease H-like 168 464 IPR012337 -
Pumo6g02754 515 Gene3D - 238 515 IPR036397 GO:0003676
Pumo6g02754 515 Pfam Piwi domain 174 462 IPR003165 GO:0003676
Pumo6g02754 515 CDD Piwi_ago-like 52 465 IPR045246 -
Pumo6g02754 515 SMART Piwi_a_2 173 466 IPR003165 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02754 Pumo-Chr6 65809661 65814216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02754 1 515 Eukaryotic Initiation Factors Gene Family AT1G48410 61.580 0.0 650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02754 K11593 - gmx:100780375 663.299