Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02753 ATGTGTGCAGTTTTCATCATGGTCAGAAAGAGAAGAACCGAAGGACCTAGTGGGGGTGAAAACTCTGATTATCAATACGGCCGAAGTGGTGATGGTGGTGTGGGCAGTGGCCATGGCGTAAGTTCTTCCTTGCTACCAAAACCAACTAAATTGGAGCAACCAATGGGGCAGATGGTGATTCATTCTGAAGCTACTGCTCCTCACTCCAGTAAATCATCAATGAGCTTCCCCCTTCGACCTGGAAAGGGTAGCTACGGCACCAAATGTGTGGTCAAGGCCAATCATTTCTTGGTTGAGTTACTGAACAAAGATCTGCATCAATATGATGTGAGACTGTACCGGGAATCTCACTTGGGTAAAAGACTTCCTGCTTATGGCGGAGGCAGGAGACTCTATACTGCTGGTCCACTTCCTTTTGTTTCAGAGGAGTTCAGAATCACTCTCATTGACGACGATGAGGGAGTAGGAGTAGGAGGACAGAGGAGGGATAGGGAGTTCAAGGTTTTGATAAAATTTGTTACACAAATAGACCTTCACCATTTAGAACTCTTTTTACAGGGAAGCCAAACTGATGATCCTCAAGCGGCTTTGCAGGCTCTTGACATTATTCTGCGAGGAATCCCTACTATGTCGTATATTCCTGTAGGGAGATCATTTTTTTCACCTAAACTGGGTGGAAAACAGCATTTAGATGAGGGATTGGAAGCCTGGCGTGGTTTCTATCAGACTATTCGTCCTAGGCAAATGGGATTGTCACTGAACATTAACTTTACCTCCATTGCATTTATTGAGCCACTGCCAGTAATTGAGTTTGTAACTCAACTGCTGAGTAGAGATGTAACCCCCCAACCATTGTCTGATTCTGATTGTGTGAAGACCAGATTTTCTTTAAATGGCATCAAAGTTCAAGTAACATATCGCGAAATTGGGAGAAGAAAATATCGTATCTTTGGACTGACTTCACAGGAAACTAGAGAGTTGACATTCCCCGTAGATGAAAGGGGAACCATGAAGACTGTTGTGGATTACTTCTATGAGAACTATGGGACTGTCATTCAATATACTCAGTGGCCTTGTCTGCAAGTTGGCAATACACAAAGACCAATGTAG 1110 0.4378 MCAVFIMVRKRRTEGPSGGENSDYQYGRSGDGGVGSGHGVSSSLLPKPTKLEQPMGQMVIHSEATAPHSSKSSMSFPLRPGKGSYGTKCVVKANHFLVELLNKDLHQYDVRLYRESHLGKRLPAYGGGRRLYTAGPLPFVSEEFRITLIDDDEGVGVGGQRRDREFKVLIKFVTQIDLHHLELFLQGSQTDDPQAALQALDIILRGIPTMSYIPVGRSFFSPKLGGKQHLDEGLEAWRGFYQTIRPRQMGLSLNINFTSIAFIEPLPVIEFVTQLLSRDVTPQPLSDSDCVKTRFSLNGIKVQVTYREIGRRKYRIFGLTSQETRELTFPVDERGTMKTVVDYFYENYGTVIQYTQWPCLQVGNTQRPM 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02753 369 ProSiteProfiles PAZ domain profile. 266 367 IPR003100 GO:0005515
Pumo6g02753 369 CDD PAZ_argonaute_like 265 368 - -
Pumo6g02753 369 Gene3D paz domain 265 369 - -
Pumo6g02753 369 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 69 368 - -
Pumo6g02753 369 Pfam PAZ domain 296 367 IPR003100 GO:0005515
Pumo6g02753 369 Pfam Argonaute linker 1 domain 214 263 IPR014811 -
Pumo6g02753 369 MobiDBLite consensus disorder prediction 12 48 - -
Pumo6g02753 369 SMART DUF1785_2 213 265 IPR014811 -
Pumo6g02753 369 SUPERFAMILY PAZ domain 90 367 IPR036085 GO:0005515
Pumo6g02753 369 Pfam N-terminal domain of argonaute 87 204 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02753 Pumo-Chr6 65807728 65809654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02753 40 368 Eukaryotic Initiation Factors Gene Family AT1G48410 57.865 4.36e-134 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02753 K11593 - gmx:100778754 481.485