Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02733 ATGTTATCCAAAGCCAAGCAATCTTCCAGCTCAGGAGATACCATCATCCCTCACACATCAGAGACCAACCAATCAAATCCTTGCATTGGATTACAAATCTCTCAGCTTCCACTGCTGCTGCTTCCCTTGGCATGTCAGAAATGCTTGGAAACCCCATCAACCTCAGTGGTGCCACAAGGCCAGCTCCATCTGCTTCTAGCCCTGCCTCCTTCAAGACTGTGGCTCTTTTCTCCGAAAAAGAAGGCTGCACCACCACCTCCAAAAAAAGCTGCTGCTGTCTCTCCTGCCAATGATGAGCTTGCCAAGTGGTATGGTCCTGACAGAAGGATCTTCTTGCCAGAGGGTCTCTTGGACCGATCTGAGATCCCAGAGTACTTGACTGGAGAAGTCCCCGGAGACTATGGTTATGACCCTTTTGGTCTTAGCAAGAAGCCAGAAGACTTTGCCAAATATCAGGCATTTGAGTTGATTCACGCCAGATGGGCAATGCTTGGTGCTGCTGGATTCATCATTCCTGAGGCCTTCAACAAATATGGAGCAAACTGCGGTCCTGAGGCTGTTTGGTTCAAGACCGGAGCTCTGCTTCTTGATGGGGGTACGTTGAACTACTTCGGGAAACCCATCCCCATCAATCTTATTGTGGCTGTCATTGCTGAGATTGTTCTTGTGGGAGGTGCAGAGTACTACAGAATTATTAATGGCCTGAATTTTGAAGACAAACTTCATCCAGGTGGTCCATTTGACCCATTGGGGCTTGCAAATGATCCAGACCAAGCCTGCACTTCTAAAGGTGAAGGAAATTAA 804 0.4813 MLSKAKQSSSSGDTIIPHTSETNQSNPCIGLQISQLPLLLLPLACQKCLETPSTSVVPQGQLHLLLALPPSRLWLFSPKKKAAPPPPKKAAAVSPANDELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLNFEDKLHPGGPFDPLGLANDPDQACTSKGEGN 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02733 267 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 88 259 IPR001344 GO:0009765|GO:0016020
Pumo6g02733 267 FunFam Chlorophyll a-b binding protein, chloroplastic 110 265 - -
Pumo6g02733 267 Pfam Chlorophyll A-B binding protein 123 259 IPR022796 -
Pumo6g02733 267 SUPERFAMILY Chlorophyll a-b binding protein 102 261 - -
Pumo6g02733 267 MobiDBLite consensus disorder prediction 1 22 - -
Pumo6g02733 267 Gene3D Chlorophyll a/b binding protein domain 110 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02733 Pumo-Chr6 65627971 65630592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02733 93 263 Chloroplast and Mitochondria Gene Families AT4G10340 85.965 2.60e-100 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02733 K08916 - gmx:100806585 353.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02733 6 65627971 65630592 Pumo6g02733 6 65627971 65630592 ECH
Pumo6g02733 6 65627971 65630592 Pumo3g01689 3 26013774 26016735 PCT