Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02724 ATGGAGGAAAGAGAGATTTTTAGTTCTGGGCATGCTGCTAAGGTTGTCGAGGCCCCCCAGAGCTTCCACGTGGCACTAAACTCCGTGCAGTTTTCCGGGCCCACAGTGGAGTTACCGGCACCGGCTCCGGCACCGGCACCGGCACCGGTGAGTGCTCCAGTGATGACTTCAGGTAGTACGGAGGGGAAGAAGAAGAGGGGCAGGCCTAGGAAGTATGGACCGGACGGCAAGGTGGCGCTGTCGCCGATGCCGATATCGGCGTCGATTCCGTTGACCGGAGACTTCTCAGCCTGGAAAAGGGGCAGAGGGAAGCCACTTGAATCAATCAAGAAGTCTTTTAAGTTTTATGAATCTGAAGGTGCAGGACCAGGTGATGGAATTTCATTCTCAGTTGGTGCCAATTTCACACCTCACATCCTTACAGTAAATGATGGCGAGGATGTTACTATGAAGATTATGTCCTTCTCTCAACAAGGATGTCGAGCGATTTGCATTCTGTCTGCAAATGGCACAATTTCAAATGTTACACTACGCCAACCAACTTCATCTGGTGGTACTTTAACATATGAGGGGCGGTTTGAAATTCTTTCCTTGTCTGGTTCATATATGCCAACTGAGAATGGATTAACAAAGAGCAGATCTGGTGGGATGAGCGTCTCTTTGGCCGGTCCAGATGGTCGAGTGATGGGGGGTGGATTGGCTGGTTTGCTGGTAGCTGCAGGTCCTGTGCAGGTTGTTGTGGCTAGTTTTCTTCCTGGTCACCAGCTAGAGCAGCAGAAACCGAAGAAGCCGAGGGTGGAGCATCATATATCAATGACTGCCCCTACACATGTCAACCCTACTTCTGCTGAAGAAATAAGAATTGGTCTTGGTGGAGTAAAGCCAATCATGACACCAGCTGCTTTTCAAGTGGACAACATTTTTGGCAATGGTCAAAGCTCTGGTGACTCACCTTCTGATGATGAAGAAGCTCCTTTCACTGAAAAAGAGTCTAACCTCAGCCATGCAGATGCTGGAGTTGCATGCTAA 1029 0.4956 MEEREIFSSGHAAKVVEAPQSFHVALNSVQFSGPTVELPAPAPAPAPAPVSAPVMTSGSTEGKKKRGRPRKYGPDGKVALSPMPISASIPLTGDFSAWKRGRGKPLESIKKSFKFYESEGAGPGDGISFSVGANFTPHILTVNDGEDVTMKIMSFSQQGCRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPTENGLTKSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVASFLPGHQLEQQKPKKPRVEHHISMTAPTHVNPTSAEEIRIGLGGVKPIMTPAAFQVDNIFGNGQSSGDSPSDDEEAPFTEKESNLSHADAGVAC 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02724 342 MobiDBLite consensus disorder prediction 307 342 - -
Pumo6g02724 342 Gene3D - 137 270 - -
Pumo6g02724 342 ProSiteProfiles PPC domain profile profile. 129 276 IPR005175 -
Pumo6g02724 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 41 317 IPR039605 GO:0003680
Pumo6g02724 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 137 250 IPR005175 -
Pumo6g02724 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 134 254 - -
Pumo6g02724 342 FunFam AT-hook motif nuclear-localized protein 1-like 137 268 - -
Pumo6g02724 342 MobiDBLite consensus disorder prediction 38 79 - -
Pumo6g02724 342 CDD DUF296 136 250 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02724 Pumo-Chr6 65507693 65513847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02724 56 266 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 65.179 5.81e-91 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02724 - - gmx:102667678 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02724 6 65507693 65513847 Pumo3g01685 3 25943886 25950131 ECH
Pumo6g02724 6 65507693 65513847 Pumo6g02724 6 65507693 65513847 ECH
Pumo6g02724 6 65507693 65513847 Pumo3g01685 3 25943886 25950131 PCT