Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02708 ATGCCGTCCCTCGTCCCCCTCCCGAACGACGCCGTTCCGAGCAAGCCCCCAAAAGACAAGACAAAGAAGAAAGAGAAGAGGAGCAAGGAGGAGAAGAAGAACCCGCCCCCGAACGACGCCGTTTCGGAGCCTCCGAGCTTGAAGAAGCGCAAGAAGGGTTGGGATGATGAAGAAGAGGAGCAACAGCAGCAGAGGAGCGAGACCAGCTCGGAGCTCGTGGACCCCACCGAGGAGCGTTTGAAATCGAATAAGAAGAAGGCGAAGCTCGCAGAAGAAGAAGAAGAAGTTGCCAAGGGTGAAGATTCGAACGCGCTTTCCAATTTCAGGATAGCAGAGCCGTTGAGGGAGAAATTGAAGGAGAAAGGGATCGAAGCGCTGTTCCCCATTCAGGCCATGACCTTCGACACCATTCTCGATGGCTCCGATTTGGTTGGTCGTGCTCGCACCGGTCAGGGGAAAACTCTGGCTTTTGTGTTGCCCATATTAGAGTCTTTGACAAATGGTCCTGCAAAAGGTGTGAGAAAGACTGGTTATGCGAGGCCTCCGAGTGTACTTGTGCTTTTACCTACTAGGGAATTGGCCTGTCAGGTTTATGCTGATTTTGAAGTTTATGGTACCGTAATGGGATTGAGTTCTTGCTGTTTATATGGTGGAACTCCGTATCATGCTCAAGAGATTAAGCTCAGGAGAGGTGTTGATATTGTTGTCGGAACACCTGGTCGTGTAAAGGATCATATAGAGAGGGAAAACCTTGACCTGAGCCATCTAAGGTTCCGTGTCCTTGATGAGGCAGATGAGATGCTGAGGATGGGCTTTGTTGAAGATGTTGAACTCATTTTAGGTAAGGTGCAGGATGTTGGTAAAGTTCAGACACTTCTTTTTAGTGCCACTTTACCAGACTGGGTTAAGCATATTTCTATGAAGTTTCTGAAACCAGAAAAGAAAACCGCTGATCTTGTTGGGAATGAGAAAATGAAGGCTAGCACCAATGTTAGGCATATTGTTCTTCCATGTCTGAGTTCTACCATGTCCCAGATTATACCTGACATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATAATATTTACTGAAAAAAAGGAGACCGCCTCTGAGCTTGCAGGGTTGTTGATGGGAGCAAGGGCTCTCCATGGTGACATACAACAGTCACAACGGGAGGTTACATTGTCAGCTTTTAGATCTGGGAAATTCATGACATTGGTAGCCACAAATGTGGCTGCTAGAGGTCTGGATATTAATGATGTTCAATTGATTATCCAGTGTGAGCCTCCACGGGATGTAGAAGCCTATATCCATCGATCAGGGCGCACAGGAAGAGCTGGTAACACTGGAGTTGCTGTAATGCTTTATGATCCCAGAAGGTCGTTAAAAATATCTCAAATAGAAAGGGAATCCGGTGTGAAATTTGAACGCGTATCTGCCCCTCAGCCTGATGATATTGCGAAAGCTGCTGGTGCGGAAGCTGCCGCTGAAGTGATTACCCAAGTGTCTGATAGTGTGATTCCTGCATTCAAGTCTGCTGCTGAGGAGCTTTTGAGCAAATCTGGTTTATCAGCTGTTGAGTTACTAGCAAAAGCCCTTGCCAAGGCTGCAGGTTTTACGGAGTTAAAGAAAAGATCACTTCTGGCTTCCAGGGATGATTATGTTACAGTACTTTTTCAGACTGGAAGACCTATGTACTCTCCGATCCATACACTTGGACTCCTGAAGAGATTCTTGCCTGAGGAGAAGGTTGAGGCAGTACAGGGTCTTAATTTCACTGCAGATAAAAATGGTGCCGTTTTTGATGTACCAGCCGAAGATGTAGATACATTTCTTACAGGTTTGCAGAATGACCCTGAGGTAAGCCTAGAGGTGGTCAAAGCATTACCACCTTTGCTAGAAAGAGAATTTTCAAGAGGAGCCAGATTTGGTGGTGGTCGCTGGAATAGTGATAGAAGTGGTGGGAATAGGTTCTCCCGTGGAAGAGGTGGCTGGAATGGTGGATATTCGGGTCAGAATAATAGGTTTTCAAATGGTTTTAGAGCTGGGAGAGGTAATGGAAACAGAGGTTGA 2076 0.4668 MPSLVPLPNDAVPSKPPKDKTKKKEKRSKEEKKNPPPNDAVSEPPSLKKRKKGWDDEEEEQQQQRSETSSELVDPTEERLKSNKKKAKLAEEEEEVAKGEDSNALSNFRIAEPLREKLKEKGIEALFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKGVRKTGYARPPSVLVLLPTRELACQVYADFEVYGTVMGLSSCCLYGGTPYHAQEIKLRRGVDIVVGTPGRVKDHIERENLDLSHLRFRVLDEADEMLRMGFVEDVELILGKVQDVGKVQTLLFSATLPDWVKHISMKFLKPEKKTADLVGNEKMKASTNVRHIVLPCLSSTMSQIIPDIIRCYSSGGRTIIFTEKKETASELAGLLMGARALHGDIQQSQREVTLSAFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSLKISQIERESGVKFERVSAPQPDDIAKAAGAEAAAEVITQVSDSVIPAFKSAAEELLSKSGLSAVELLAKALAKAAGFTELKKRSLLASRDDYVTVLFQTGRPMYSPIHTLGLLKRFLPEEKVEAVQGLNFTADKNGAVFDVPAEDVDTFLTGLQNDPEVSLEVVKALPPLLEREFSRGARFGGGRWNSDRSGGNRFSRGRGGWNGGYSGQNNRFSNGFRAGRGNGNRG 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02708 691 Gene3D - 46 316 IPR027417 -
Pumo6g02708 691 SMART ultradead3 122 334 IPR014001 -
Pumo6g02708 691 MobiDBLite consensus disorder prediction 667 682 - -
Pumo6g02708 691 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 488 IPR001650 -
Pumo6g02708 691 Pfam Helicase conserved C-terminal domain 348 448 IPR001650 -
Pumo6g02708 691 SMART helicmild6 367 448 IPR001650 -
Pumo6g02708 691 MobiDBLite consensus disorder prediction 15 37 - -
Pumo6g02708 691 CDD SF2_C_DEAD 331 457 - -
Pumo6g02708 691 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 52 498 - -
Pumo6g02708 691 Pfam DEAD/DEAH box helicase 127 304 IPR011545 GO:0003676|GO:0005524
Pumo6g02708 691 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 134 316 IPR014001 -
Pumo6g02708 691 MobiDBLite consensus disorder prediction 1 102 - -
Pumo6g02708 691 Gene3D - 557 629 - -
Pumo6g02708 691 Gene3D - 330 556 IPR027417 -
Pumo6g02708 691 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 260 268 IPR000629 -
Pumo6g02708 691 Pfam GUCT (NUC152) domain 539 633 IPR012562 GO:0003723|GO:0004386|GO:0005524
Pumo6g02708 691 CDD GUCT_RH7_like 546 631 - -
Pumo6g02708 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 462 IPR027417 -
Pumo6g02708 691 CDD DEADc 114 314 - -
Pumo6g02708 691 MobiDBLite consensus disorder prediction 44 95 - -
Pumo6g02708 691 MobiDBLite consensus disorder prediction 645 691 - -
Pumo6g02708 691 SUPERFAMILY RNA-binding domain, RBD 543 626 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02708 Pumo-Chr6 64912415 64918326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02708 83 485 Eukaryotic Initiation Factors Gene Family AT1G72730 29.327 1.95e-40 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02708 K16911 - vvi:100258263 869.766