Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02691 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTTATCCAGTTTTCTAATAGCCCCCACCAGCAGCAGCAACAACACAAATTCTCCGAAGATCTGATTCTGGATGATTATGCTTCTCTGGATGTCAATGATTCTGACCAAAAATTCACTAGTAGCAGCCAACCAACAAAGAAACTTCTCTATGGGGCAAATAAAAAGAATCACGACTCTAATGAACATAAGAAGAAGAAGATGGTTCATAAGGAGATTGAAAGGCAAAGGAGACAAGAAATGGCTACCTTCTATGCCTCTCTTAGATCCCTTCTCCCTCTTGAGTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAATGAGGCAGTGAATTACATAAAGCACATGCAGAACAATATCAAAGAACTCGGTGCCAAGAGAGATGAACTGAAGAAACTCTCCAATCATTGCAATAATATGGAAAATAACCATGACAGCTTGCATCCATCTTGCAACTTTACTATCCACGAGAATAATGGTATTATGGGAATCGAAATCACCAGTGGCTTCAGAGAGGAAAAGCCTAAAATTTCAAAGTTACTACAATTACTGATTGAAGAAGGTCTTGAAGTTGTTAGTTGCCATTCAACAGAAGTCAATGGCAGATTGCTCCACAGTGTGCAGTTTGAGGTTAACAATTCCAACAGTGTAGATCTACCTGAGCTGAGAAAGAAAGTTTCCAATGCATTTCCAACATTTAGATGTTCTGATTAA 744 0.3925 MFPLQRGNELVIQFSNSPHQQQQQHKFSEDLILDDYASLDVNDSDQKFTSSSQPTKKLLYGANKKNHDSNEHKKKKMVHKEIERQRRQEMATFYASLRSLLPLEFIKGKRSISDHMNEAVNYIKHMQNNIKELGAKRDELKKLSNHCNNMENNHDSLHPSCNFTIHENNGIMGIEITSGFREEKPKISKLLQLLIEEGLEVVSCHSTEVNGRLLHSVQFEVNNSNSVDLPELRKKVSNAFPTFRCSD 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02691 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 143 IPR036638 GO:0046983
Pumo6g02691 247 Coils Coil 123 153 - -
Pumo6g02691 247 CDD bHLH_AtORG2_like 75 146 - -
Pumo6g02691 247 SMART finulus 80 132 IPR011598 GO:0046983
Pumo6g02691 247 FunFam Transcription factor bHLH126 65 154 - -
Pumo6g02691 247 Pfam Helix-loop-helix DNA-binding domain 75 127 IPR011598 GO:0046983
Pumo6g02691 247 Gene3D - 64 155 IPR036638 GO:0046983
Pumo6g02691 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 126 IPR011598 GO:0046983
Pumo6g02691 247 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 62 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02691 Pumo-Chr6 64368757 64370708 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02691 75 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 46.154 6.61e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo6g02691 HLH 2.3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02691 - - gmx:100780888 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02691 6 64368757 64370708 Pumo6g02691 6 64368757 64370708 ECH
Pumo6g02691 6 64368757 64370708 Pumo3g00866 3 13548432 13552387 PCT