Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02690 ATGGCAAGGAGAAAGAGTAGCAAACACTTGGTTGTTGGGGAGAAAGAAGATTATAAGCTTGCCATGGATGAAAACAAGAAGTGGATGCATAAGGAAACTGAAAGACAAAGAAGGCAAGAGATGGGAAAACTCTGCACCACCCTTAGATCGCTTCTGCCTTTAGAATATATTAAGGGAAAACGCTCAACCTCTGATCATGTGAATGAGGCTATGAATTATATCAACCACCTACAAAATAAGGTGAAGCAATTGGAAGCAAAGAAGGATGATAATAATATTGGTCCTGAGAATGAAGGCTCTAGCACTACTCATCATCCACCCTTGGTTTCTGTTCATCCTTTCCCGGGAGGACTTGAGATTATGTGCAGTTACAGCTTCAGGAAAATTGTGTTTCCCATGTCAAGAGTGTTGGACATTCTGCTTAAAGAAGGGCTTAACGTGGTTAGCACTACTTCCATCAGAAGAGATGGCAGATTCATACACACTATACAATCAGAGGATCCAAATCATCTGAATATGATTGGCACTGATTACTCTGAACTGCAAATAAAGCTTATGGAGGCAATATCATCTTCAAGCGAGTAA 585 0.4051 MARRKSSKHLVVGEKEDYKLAMDENKKWMHKETERQRRQEMGKLCTTLRSLLPLEYIKGKRSTSDHVNEAMNYINHLQNKVKQLEAKKDDNNIGPENEGSSTTHHPPLVSVHPFPGGLEIMCSYSFRKIVFPMSRVLDILLKEGLNVVSTTSIRRDGRFIHTIQSEDPNHLNMIGTDYSELQIKLMEAISSSSE 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02690 194 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 24 90 IPR036638 GO:0046983
Pumo6g02690 194 SMART finulus 31 83 IPR011598 GO:0046983
Pumo6g02690 194 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 23 187 - -
Pumo6g02690 194 Gene3D - 18 99 IPR036638 GO:0046983
Pumo6g02690 194 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 25 77 IPR011598 GO:0046983
Pumo6g02690 194 FunFam Transcription factor bHLH126 17 104 - -
Pumo6g02690 194 MobiDBLite consensus disorder prediction 89 108 - -
Pumo6g02690 194 CDD bHLH_AtORG2_like 26 90 - -
Pumo6g02690 194 Coils Coil 67 94 - -
Pumo6g02690 194 Pfam Helix-loop-helix DNA-binding domain 27 78 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02690 Pumo-Chr6 64323991 64324872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02690 23 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 42.135 3.70e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pumo6g02690 HLH 5.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02690 - - ccaj:109791323 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02690 6 64323991 64324872 Pumo6g02690 6 64323991 64324872 ECH
Pumo6g02690 6 64323991 64324872 Pumo3g00868 3 13578503 13579803 PCT