Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02668 ATGGACGTGGACGGTGGCAACAAGCGCGTGTACAACCGTCTTGGCGGGGACGCGAAGCACCAGAAAGTGTGCTACCACTGGCAAGCGGGGAAGTGTAGCCGTTACCCGTGCCCCTTCCTGCACAGCGAATTGCCCGTTTTGCACCACCACGCCAATGGCGCCTCCTCGAAGCGGGCCTACGACAATTCGGGCTTTTCGGGCCCGCGCCGCAGCCCCAAATTCAACAACACGTGGGGCCGAGGCGGGGGCCGCGGTGGTGGTGGTGGTGGTGCCGGTGCCGGTGCCGGTGCTGCTGCCGGTGGTGGTGGTGGTGCCGGTAGAGGGGTGGTGGTGAAGCAGGAGAAAGTTTGTAATTATTGGATGCAGGGGAATTGCAGTTTTGGAGAGAGGTGCAAGTTCCTTCACTCTTGGAGTGTGGGGGATGGGTTTTCTTTGCTGACTCAGCTTGAAGGGCATCAGAAGGCTGTGAGTGCAATTGCCTTTCCCTCTGGTTCAGATAAGCTTTATACGGGAAGCACTGACGAGACTGCAAAGATTTGGGACTGCCAATCCGGAAAGTGTGTAGGTGTGATCAATCTTGGTGGTGAAGTAGGTTGTATGATCAGTGAAGGCCCCTGGGTTTTTGTTGGGATACCCAATTTTGTCAAGGCCTGGAACACACAAAATGTATCGGAGCTAAGTCTAAATGGCCCTGTTGGACAAGTTTATGCACTTGTTGTTAATAATGACATGCTCTTTGCTGGTACACAGGATGGATCTATATTGGCATGGAAGTTTACTGTAGCTACCAACTGCTTTGAGCCAGCTGCATCACTTAAAGGTCATTCTCGGGGTGTTGTTTCATTAGTTGTTGGTGCTAATAGACTTTACTCTGGTTCAATGGACAATACAATAAGAGTGTGGAACCTTGAAACCTTGCAGTGTTTACAGACACTAACAGAGCACACATCTGTTGTCATGTCTGTTCTCTGCTGGGATCAATTCCTTTTATCTTGTTCATTGGACAAAACAGTGAAGGTATGGTATGCTAGTGAAAGTGGAAACTTAGAAGTGACATATACTCACACCGAAGAAAATGGTATACTTACCCTATGTGGGATTCATGATTCGCAAGGCAAGCCCATTTTGCTGTGCGCTTGCAATGATAATACTGTGCGCCTATATGATCTGCCATCATTTGCCGAGAGAGGCAAGATATTCACAAAACAAGAGGTACGAGCAATTCAGATCGGGCCGAACGGCATATTCTTCACCGGCGATGGTACTGGTGAAGTAAGAGTGTGGAATTGGATAGCAGAGGCAACTACTACCAACCAATAA 1320 0.4955 MDVDGGNKRVYNRLGGDAKHQKVCYHWQAGKCSRYPCPFLHSELPVLHHHANGASSKRAYDNSGFSGPRRSPKFNNTWGRGGGRGGGGGGAGAGAGAAAGGGGGAGRGVVVKQEKVCNYWMQGNCSFGERCKFLHSWSVGDGFSLLTQLEGHQKAVSAIAFPSGSDKLYTGSTDETAKIWDCQSGKCVGVINLGGEVGCMISEGPWVFVGIPNFVKAWNTQNVSELSLNGPVGQVYALVVNNDMLFAGTQDGSILAWKFTVATNCFEPAASLKGHSRGVVSLVVGANRLYSGSMDNTIRVWNLETLQCLQTLTEHTSVVMSVLCWDQFLLSCSLDKTVKVWYASESGNLEVTYTHTEENGILTLCGIHDSQGKPILLCACNDNTVRLYDLPSFAERGKIFTKQEVRAIQIGPNGIFFTGDGTGEVRVWNWIAEATTTNQ 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02668 439 ProSiteProfiles Zinc finger C3H1-type profile. 18 44 IPR000571 GO:0046872
Pumo6g02668 439 Gene3D - 137 265 IPR015943 GO:0005515
Pumo6g02668 439 MobiDBLite consensus disorder prediction 57 73 - -
Pumo6g02668 439 MobiDBLite consensus disorder prediction 57 98 - -
Pumo6g02668 439 Gene3D - 266 438 IPR015943 GO:0005515
Pumo6g02668 439 PANTHER - 112 434 IPR044715 -
Pumo6g02668 439 Pfam WD domain, G-beta repeat 307 341 IPR001680 GO:0005515
Pumo6g02668 439 Pfam WD domain, G-beta repeat 268 302 IPR001680 GO:0005515
Pumo6g02668 439 Pfam WD domain, G-beta repeat 145 181 IPR001680 GO:0005515
Pumo6g02668 439 SUPERFAMILY WD40 repeat-like 143 430 IPR036322 GO:0005515
Pumo6g02668 439 FunFam Zinc finger CCCH domain-containing protein 48 229 437 - -
Pumo6g02668 439 FunFam Zinc finger CCCH domain-containing protein 48 137 227 - -
Pumo6g02668 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 272 305 - -
Pumo6g02668 439 Gene3D - 109 136 - -
Pumo6g02668 439 ProSitePatterns Trp-Asp (WD) repeats signature. 289 303 IPR019775 -
Pumo6g02668 439 SMART WD40_4 142 181 IPR001680 GO:0005515
Pumo6g02668 439 SMART WD40_4 392 429 IPR001680 GO:0005515
Pumo6g02668 439 SMART WD40_4 221 258 IPR001680 GO:0005515
Pumo6g02668 439 SMART WD40_4 346 389 IPR001680 GO:0005515
Pumo6g02668 439 SMART WD40_4 265 302 IPR001680 GO:0005515
Pumo6g02668 439 SMART WD40_4 305 342 IPR001680 GO:0005515
Pumo6g02668 439 PRINTS G protein beta WD-40 repeat signature 168 182 IPR020472 -
Pumo6g02668 439 PRINTS G protein beta WD-40 repeat signature 329 343 IPR020472 -
Pumo6g02668 439 PRINTS G protein beta WD-40 repeat signature 289 303 IPR020472 -
Pumo6g02668 439 SMART c3hfinal6 20 43 IPR000571 GO:0046872
Pumo6g02668 439 SMART c3hfinal6 113 137 IPR000571 GO:0046872
Pumo6g02668 439 SUPERFAMILY CCCH zinc finger 113 136 IPR036855 GO:0046872
Pumo6g02668 439 ProSiteProfiles Zinc finger C3H1-type profile. 112 138 IPR000571 GO:0046872
Pumo6g02668 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 272 311 IPR001680 GO:0005515
Pumo6g02668 439 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 149 181 - -
Pumo6g02668 439 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 114 136 IPR000571 GO:0046872
Pumo6g02668 439 ProSiteProfiles Trp-Asp (WD) repeats profile. 149 190 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02668 137 370 Miscellaneous Gene Families AT5G08390 24.696 2.27e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pumo6g02668 WD40 0.00014 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02668 - - gmx:100775542 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02668 6 63865373 63872582 Pumo6g02668 6 63865373 63872582 ECH