Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02661 ATGGCCTCTGCAACAACAACATCACTCTCTCACCGTCACACTCCTCTTCTTCTTCATTCTTCTTCGCATTCTCCTCTTCCCATCAAAATTACCAAACCGCCCCTCTCCCTTTCCCTCTCGCCCTGGCCCCTCCTCACGCACCCTCTCCACGCGCGCTTCCTCCTCCCTCCGCCACGCGCCTACGTCACCGCGCCCGCCTCCGACCCGAACTTCGCCGACCCCGACCCGAAACTCGCCGGGCCGGGCCCGGAGAACGCGACGCCGCGAAACGTGATCACGTGGAGCCTCCTCTGCTCGCTTCTCATGAAGCACAAGCTTCGCCTCGCCCTCGCGGTCGCATCGCTCCTCGCATGCTCTACCTGTACCCTATCCATGCCCATCTTTTCCGGACGGTTTTTTGAAGTTTTAATTGGTGCTAGACCTGAGCCGTTATGGAAGCTGCTTGGTAAAATTGGAGTTCTGTATGCCATGGAGCCAGTTTTAACTATTATTTTTGTCATAAACATGAACATAGTGTGGGAGAAAATTATGTCAACACTAAGAGCTCAGATCTTTGGAAGAATATTGATTCAGAAGATTGAATTTTTTGACAAATACAAGGTTGGTGAACTCACAGGTTTGTTAACATCTGATTTGGGTTCTCTTAAAGATATTGTCAGTGAGAATGTCTCAAGGGATCGTGGATTCAGGGCATTATCTGAGGTCATTGGAACAATATTTATACTTTTTTCGTTATCCCCACAACTGGCACCCATTCTAGGTGTTCTGATGCTTGCAGTTTCCATTTCAATTGCTGTCTACAAGAGATCTACTTTGCCGGTTTTTAAAGCACATGGGATGGCCCAAGCATCTATATCTGATTGTGTAACAGAAACATTTTCTGCTATTCGAACAGTAAGATCCTTTGGTGGTGAAAAGCGCCAAATGTTCACATTTGCTAATCAGGTTCTATCTTTCCAATCAAGTGGGATAAAGCTTGGAACTTTCAAATCTGTAAATGAATCCTTGACTAGAGTTGCTGTTTATATTTCTTTAATAGCATTATATTGTCTTGGAGGAAGCAAGGTTAAGGCGGGTGAGCTCTCTGTTGGAACCATGGCATCTTTTATTGGATATACTTTCACTTTAACATTCGCTGTTCAAGGACTGGTTAATACTCTTGGAGATCTTCGTGGAACTTTTGCTGCTGTTGAGAGGATCAACTCTGTTTTGTCTGGAGTTCAAGTTGATGATGCCCTTGCCTATGGCTTAGAAAGAGAACTGAAACAAAAAACACTGGATGATGAAAACTATAAATTGGTCTTATCTAATATTTCTAATGAGAATAACCAAAAAAATTATTTGCATTACATGTCAGCTCTTAAAACATCAAGCAATTTGTTTAGCTTACCATGGTCTGGAGATATTTGTCTTGAAGATGTATATTTCTCTTATCCTTTACGGCCAGATGTGGAAATCTTGCGTGGCTTAAATTTAAGACTGAAATGTGGAACTGTAACTGCACTGGTGGGTCCTAGTGGTGCAGGCAAAAGTACTGTAGTACAGCTATTGTCTCGTTTTTATGAGCCAACAAGTGGTTGTATAACAGTTGCAGGAGAAGATGTCCGAACATTTGATAAGAGTGAATGGGCCCGGGTTGTCTCTATTGTAAATCAAGAGCCTGTTCTGTTTTCGGTTTCTGTTGGAGAAAATATTGCATATGGGCTTCCAGATGAAGATGTTTCTAAAGAAGATGTGATTAAGGCAGCGAAAGCTGCAAATGCTCATGACTTTATAATTTCACTTCCACAGGGCTATGATACACTTGTTGGAGAGCGTGGAGGCCTACTGAGTGGAGGACAAAGACAGAGAATTGCTATTGCGCGGGCTCTCCTAAAGAATGCTCCTATCCTTATACTTGATGAGGCTACCAGTGCCCTGGATGCCGTCAGTGAGCGATTGGTCCAGGATGCTCTCAACCAGTTGATGAAGGGAAGGACAACATTAGTGATAGCTCATCGATTAAGCACAGTCCAAAATGCATATCAAATTGCAGTCTGTTCTGAGGGGAGGATTGCAGAACTAGGCACCCATTTTGAGCTGTTGGCTAAGAAGGGTCAATATGCTTCACTGGTTGGCACTCAAAGGCTTGCATTTGAATAA 2142 0.4393 MASATTTSLSHRHTPLLLHSSSHSPLPIKITKPPLSLSLSPWPLLTHPLHARFLLPPPRAYVTAPASDPNFADPDPKLAGPGPENATPRNVITWSLLCSLLMKHKLRLALAVASLLACSTCTLSMPIFSGRFFEVLIGARPEPLWKLLGKIGVLYAMEPVLTIIFVINMNIVWEKIMSTLRAQIFGRILIQKIEFFDKYKVGELTGLLTSDLGSLKDIVSENVSRDRGFRALSEVIGTIFILFSLSPQLAPILGVLMLAVSISIAVYKRSTLPVFKAHGMAQASISDCVTETFSAIRTVRSFGGEKRQMFTFANQVLSFQSSGIKLGTFKSVNESLTRVAVYISLIALYCLGGSKVKAGELSVGTMASFIGYTFTLTFAVQGLVNTLGDLRGTFAAVERINSVLSGVQVDDALAYGLERELKQKTLDDENYKLVLSNISNENNQKNYLHYMSALKTSSNLFSLPWSGDICLEDVYFSYPLRPDVEILRGLNLRLKCGTVTALVGPSGAGKSTVVQLLSRFYEPTSGCITVAGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDEDVSKEDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNQLMKGRTTLVIAHRLSTVQNAYQIAVCSEGRIAELGTHFELLAKKGQYASLVGTQRLAFE 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02661 713 Gene3D - 467 710 IPR027417 -
Pumo6g02661 713 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 77 711 IPR039421 -
Pumo6g02661 713 CDD ABC_6TM_TAP_ABCB8_10_like 118 400 - -
Pumo6g02661 713 FunFam ABC transporter B family member 28 85 408 - -
Pumo6g02661 713 ProSitePatterns ABC transporters family signature. 610 624 IPR017871 GO:0005524|GO:0016887
Pumo6g02661 713 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 109 392 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g02661 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 460 708 IPR027417 -
Pumo6g02661 713 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 467 711 - -
Pumo6g02661 713 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 469 707 IPR003439 GO:0005524
Pumo6g02661 713 Pfam ABC transporter transmembrane region 110 379 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pumo6g02661 713 SUPERFAMILY ABC transporter transmembrane region 97 405 IPR036640 GO:0005524|GO:0016020
Pumo6g02661 713 CDD ABC_MTABC3_MDL1_MDL2 469 708 - -
Pumo6g02661 713 SMART AAA_5 496 690 IPR003593 GO:0016887
Pumo6g02661 713 Gene3D ABC transporter type 1, transmembrane domain 84 406 IPR036640 GO:0005524|GO:0016020
Pumo6g02661 713 Pfam ABC transporter 487 638 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02661 Pumo-Chr6 63758704 63766066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02661 466 713 Calmodulin-binding Proteins AT2G36910 54.980 3.63e-75 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02661 K05657 - gmx:100791034 1235.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02661 6 63758704 63766066 Pumo6g02661 6 63758704 63766066 ECH