LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo6g02645	ATGACACCTTCGCGGGTGGCAGGAGGGTTAACCCAATCATCATCACATTCTGGAATTTTCTTTCAAGGAGATGGGCAGTCGCAGAATGTAGTTAACTGTCACTTAAGCTCATCTTTTGTTAACTCATCTAGCACAGTTCCTGGAGCCGGTCGTTCAAACCTGGGTCTGGTTTCTGGGGATATGAATAATGCAGTTTTGAACAGTGTGGCAAACTCAGCACCAAGTGTTGGAGCTAGTTCTTTAGTCACAGATGCAAATTCTGCTCTCTCTGGTGGCCCCCATTTGCAGAGAAGTGCCAGTGTTAACACAGACTCATACTTACGATTACCTGCCTCACCTATGTCATTTACATCAAATAATATTAGTATTTCTGGCTCATCAGTGTTGGATGGTTCCTCTGTGGTACAACAGAGCTCTCATCAAGATCAGAATGTTCAACAGTTACAGCAGAATCAGCAGCAGCCGCTGGGTGCTTCAAGTGCTACATCTTTGTCTGCATCTCAAACTGGACCGTCACCACTCCAAATGGGTGCACAAGTCCCAGGATCTTTCATTCAAGATCCAAATAATATGTCTCATCTGTCAAAGAAACCTAGAATGGATATCAAACAGGAAGATATAATGCAGCAGCAGGTCATACAACAGATTCTTCAGAGACAAGATTCCATGCAATTCCAGGGTCGTAATCCACAGTTACAGGCTTTTCTTCAGCAGCAGCAGCAGAGACTGAGACAACAACAGACGTTTCAGCAAATGCCACAATTACAGCGAGTGCACTTGCAACAGCAGCAGCAGCAACAACAGCAACAACAACAACAACAAATGCAATTGAGGCAGCAATTACAGCAACAAGCGATGCAGCCCTCTTCTGCTGTCAAGCGTCCATATGATGGTAGTATTAGTGGGGTATGTGCCCGTCGATTGATGCAGTATCTCTATCATCAAAGGCAACGGCCAAATGATAATAGCATTGCCTATTGGAGAAAATTTGTGGCTGAATATTACTCTCCTCGTGCAAAGAAACGGTGGTGCTTGTCATTATATAGCAATGTTGGGAATCATGCACTTGGTGTTTTCCCCCAAGCAGCTATGGATGCATGGCAGTGTGACATATGTGGTTCTAAATCTGGAAGGGGATTTGAGGCAACTTATGAAGTATTACCTAGACTTAATGAAATCAAATTTGGCAGTGGAGTAATTGATGAACTATTGTTTCTGGACTTGCCACGTGAAATGAGATTCCCTTCTGGTGCGATGATGTTAGAATATGCAAAAGCAGTTCAAGAGAGTGTATATGAGCAGCTTCGTGTTGTTCGTGAAGGTCAACTTCGTATCATATTCACTCAAGACTTGAAGATCTTATCCTGGGAGTTCTGTGCAAGACGCCATGAAGAACTTCTTCCTCGAAGGTTGGTTGCACCACAGGTCAATCAATTAGTTCAGGTAGCTCAAAAGTGCCAGAGTACAATTGCTGAAAGTGGGGCGGATGGGGTTTCTCAGCAAGACTTACAAACAAACAGCAACATGGTATTGACAGCAGGGCGCCAGCTTGCAAAGATTTTGGAGTTGCAATCACTAAATGACTTGGGCTTTTCTAAAAGATATGTGAGATGTTTGCAGATTTCAGAGGTTGTCAATAGCATGAAAGACCTAATAGATATCTGTGCAGAGCACAAAATTGGGGCAATCGAGAGTTTGAAAAATTATCCTAGACTAGCGACAGCCTCAAAGGTCCAGATGCAAAAGATGCAGGAAATGGAACAGCTGGCAAATGCTCAAGGTCTGCCAACTGATCGAAACACACTCAACAAGCTAATGGCACTGAATCCTGGATTGAACAACCATATAAACAACACTCATAATATGGTTAATCGTGGTGCTTTGAGTGGGTCAGCCCAAGCTGCTTTAGCACTGACCAACTACCAAAATCTTCTCATGAGGCAAAATTCAATGAATTCTAGCCCTGGCTCACTTCAGCGAGAAGGGTCCTCGTTCAATAATTCAAACCCGAGTCCCTCTTCTGCTTTGCAAGGAGCTGGTCCTGCTTTAATTACAGGCTCAATGCAGAACTCGCCTGTAGGTGGTTTCCCAAGTCCCCATCTACCCCCACAGCAGCAGCAGCAACAACTCCTTCAACAGCGCACATTAAGTGCAAATGGTTTACTGCAACAAAATCATTCACAGGGGTCCCAAGGAAACCAAGCTCTACAGCAGCAGCAGATGATCCAGCAACTGCTGCAGGAGATGTCAAATAACAATGGGGGAATGCAATCACAGTCTCTTGGTGGACCCAATGCAAATGGGAATATTGCAAAGAATTCTTCAATGGGTTTTGGGGGCCATACTCCATCCTTAAGCGGAGGTTCTGCCAATGTTCCAGGAAACAATGGACCCATTTCAAGGAATAATAGCTTCAAAACAGCTTCCAACAGTGATTCTTCTGCGGCGGCTGGTAACAATGGATTCAACCAGAGAACATCTGAGATGCCACAAAATCTACATTTGCAAGATGTGGTTCAGGATATTGGCAATGAGTTCACGGATAACCCCTTCTTTAACAGTGATCTTGATGATAACATGGGTTTCGGCTGGAAGGCATGA	2601	0.4425	MTPSRVAGGLTQSSSHSGIFFQGDGQSQNVVNCHLSSSFVNSSSTVPGAGRSNLGLVSGDMNNAVLNSVANSAPSVGASSLVTDANSALSGGPHLQRSASVNTDSYLRLPASPMSFTSNNISISGSSVLDGSSVVQQSSHQDQNVQQLQQNQQQPLGASSATSLSASQTGPSPLQMGAQVPGSFIQDPNNMSHLSKKPRMDIKQEDIMQQQVIQQILQRQDSMQFQGRNPQLQAFLQQQQQRLRQQQTFQQMPQLQRVHLQQQQQQQQQQQQQQMQLRQQLQQQAMQPSSAVKRPYDGSISGVCARRLMQYLYHQRQRPNDNSIAYWRKFVAEYYSPRAKKRWCLSLYSNVGNHALGVFPQAAMDAWQCDICGSKSGRGFEATYEVLPRLNEIKFGSGVIDELLFLDLPREMRFPSGAMMLEYAKAVQESVYEQLRVVREGQLRIIFTQDLKILSWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAESGADGVSQQDLQTNSNMVLTAGRQLAKILELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDICAEHKIGAIESLKNYPRLATASKVQMQKMQEMEQLANAQGLPTDRNTLNKLMALNPGLNNHINNTHNMVNRGALSGSAQAALALTNYQNLLMRQNSMNSSPGSLQREGSSFNNSNPSPSSALQGAGPALITGSMQNSPVGGFPSPHLPPQQQQQQLLQQRTLSANGLLQQNHSQGSQGNQALQQQQMIQQLLQEMSNNNGGMQSQSLGGPNANGNIAKNSSMGFGGHTPSLSGGSANVPGNNGPISRNNSFKTASNSDSSAAAGNNGFNQRTSEMPQNLHLQDVVQDIGNEFTDNPFFNSDLDDNMGFGWKA	866

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo6g02645	866	MobiDBLite	consensus disorder prediction	648	711	-	-
	Pumo6g02645	866	Coils	Coil	260	284	-	-
	Pumo6g02645	866	MobiDBLite	consensus disorder prediction	751	831	-	-
	Pumo6g02645	866	MobiDBLite	consensus disorder prediction	132	196	-	-
	Pumo6g02645	866	Pfam	LIM-domain binding protein	307	567	IPR029005	-
	Pumo6g02645	866	MobiDBLite	consensus disorder prediction	132	176	-	-
	Pumo6g02645	866	PANTHER	LIM DOMAIN-BINDING PROTEIN	43	852	IPR029005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo6g02645	Pumo-Chr6	63492271	63497823	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo6g02645	302	571	C2H2 Transcription Factor Family	AT1G43850	61.111	5.69e-109	353

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo6g02645	-		-	gmx:100816886	1316.21