Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02624 ATGGGCTTTCTCCGGCGACTCTTCGGCGGCAAGAAGCACCACCACAACCCCTCACCCTCCGCTCCCAAACCCAACAACAAAGACAAGAAAACATGGAGCTTCGTCAAACACACTAGTACGAGGTACAAGCCCAACAACACATTACCAACAACACTTAACAACAACAGCAACAACTTTGACCCTTCCACCGAATCCTTGGACGCCAACAAGCATGCCATCGCCGTCGCCGCCGCCACCGCCGCTGTCGCCGAAGCTGCTCTCGCCGCCGCACATGCTGCCGCCGAGGTTGTCAGGCTCACCAGCAACGCCACCGGTGGCCCCGCCAGCAGGCCCTCCACGGCGCCGCAGCCCCGCCGGGTCGCGGAGGAAACCACCGCCGCCGCCGCAGTAAAAATCCAGTCGGCGTTCCGAGGTTACTTGGCAAGGAGAGCACTGAGAGCACTTAAAGCATTGGTGAAGTTGCAAGCATTAGTAAGAGGCCACATTGTGAGGAAAGCAAACTGCAGATATGCTAAGGCGCATGCAAACTTTGGTGAGACTGCAGTCCCGGGCACGTGCAACTCGTGGGAACTTGTCCCTGAAGATTATCAGCACTCACTTCGTGCCTATAGTACGAAATTTGATGGATCTATTCTCAAGAGATGTAGTTCCAATGCAAATTTTAGGGACATTGACTTGGAGAAAGCCCGGTTTGGTTCCCATTGGTTAGACAGTTGGATGGACGAAAATTCTTGGAGCCAAACTAGAGATGCTTCATTGAAAAATGGGCACCTTGATGATGAGAAGAGTGACAAGATTCTTGAAGTAGATACTTGGAAGCCACACTTGAACTCACACCATAGTAGTGGCAGCTCATTTCAGACATCACACCATTATTTGTCTTCTGATTACAACAATGAGAATTTTGTGGCATATGAGTCTCCATCAAAACAAGAAGCAGCTTTGAGAAGTGTTGAGGATAGTCCTCAAGCATTTTCTGCCTCCTCTAGGCTTGGAAGTAGTGCAAGGAGAGGTCCATTCACACCAACTAAGAGTGAGTGTGCATGGAGTTTGTTCTGCGGCTACCCGGGTCATCCGAATTACATGGCAAATACTGAATCTTCTAGAGCCAAGGTTAGGTCACATAGTGCTCCAAGGCAAAGAATGGAGTTTGAGAGATTTGGTCATTCCACAAGAAGGTCTCTTCAGGGTTTTTGGGAAGCAGGGCCTAGTTCAGATAGGGATTCTGATTTTAGGAGCAAGGCCTATGCAACCACAAGCAGCAGCTTGAACAGAATTGGGAGTGCCAATTTAAGGTGA 1299 0.5004 MGFLRRLFGGKKHHHNPSPSAPKPNNKDKKTWSFVKHTSTRYKPNNTLPTTLNNNSNNFDPSTESLDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSNATGGPASRPSTAPQPRRVAEETTAAAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKANCRYAKAHANFGETAVPGTCNSWELVPEDYQHSLRAYSTKFDGSILKRCSSNANFRDIDLEKARFGSHWLDSWMDENSWSQTRDASLKNGHLDDEKSDKILEVDTWKPHLNSHHSSGSSFQTSHHYLSSDYNNENFVAYESPSKQEAALRSVEDSPQAFSASSRLGSSARRGPFTPTKSECAWSLFCGYPGHPNYMANTESSRAKVRSHSAPRQRMEFERFGHSTRRSLQGFWEAGPSSDRDSDFRSKAYATTSSSLNRIGSANLR 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02624 432 Pfam IQ calmodulin-binding motif 127 146 IPR000048 GO:0005515
Pumo6g02624 432 Pfam IQ calmodulin-binding motif 149 165 IPR000048 GO:0005515
Pumo6g02624 432 MobiDBLite consensus disorder prediction 37 63 - -
Pumo6g02624 432 ProSiteProfiles IQ motif profile. 149 176 IPR000048 GO:0005515
Pumo6g02624 432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 169 IPR027417 -
Pumo6g02624 432 Gene3D - 123 175 - -
Pumo6g02624 432 MobiDBLite consensus disorder prediction 395 418 - -
Pumo6g02624 432 MobiDBLite consensus disorder prediction 321 340 - -
Pumo6g02624 432 MobiDBLite consensus disorder prediction 1 63 - -
Pumo6g02624 432 SMART iq_5 124 146 IPR000048 GO:0005515
Pumo6g02624 432 SMART iq_5 147 168 IPR000048 GO:0005515
Pumo6g02624 432 Pfam Protein of unknown function (DUF4005) 321 396 IPR025064 -
Pumo6g02624 432 ProSiteProfiles IQ motif profile. 125 153 IPR000048 GO:0005515
Pumo6g02624 432 MobiDBLite consensus disorder prediction 313 341 - -
Pumo6g02624 432 PANTHER IQ-DOMAIN 5-RELATED 202 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02624 Pumo-Chr6 62543925 62550355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02624 1 397 IQD Protein Family AT5G62070 43.541 2.30e-53 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02624 - - gmx:100785181 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02624 6 62543925 62550355 Pumo6g02624 6 62543925 62550355 ECH
Pumo6g02624 6 62543925 62550355 Pumo3g00908 3 14112409 14118223 PCT