Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02621 ATGGAAGGTCATAGCGATATGGGTCTAATCAGAGAAAATTTTGATACTAGTAATTTGCTGGGGAGGCTGAGGGACGACGAGTATGAAAGCCGGTCCGGAAGTGATAATTTTGATGGCGGATCTGGTGATGATCAAGATGCTGGGGATGATCAGCCATCGAAAAAGAAGAAGAAATACCATAGACACACTCCTCAACAAATTCAGGAGCTTGAAGCGTTTTTCAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGAACGGATCTTAGTAAGAGGCTTGGCTTGGAGAACAAGCAAGTCAAGTTCTGGTTTCAGAATCGACGAACCCAAATGAAGACACAACTGGAACGCCATGAGAACATGATTCTTAAGCAGGAAAATGACAAGCTCCGAGCTGAGAACAGTGTAATGAAGGAAGCTTTGGCAAATCCAATATGTAACAACTGTGGTGGCCCAGCCATTCCTGGTCAAATTTCCTTGGAGGAGCACCAGACTAGAATTGAAAATGCTCGACTGAAGGATGAATTGAACCGAATATGTGCATTGGCAAACAAGTTCTTGGGCCGGCCCCTCTCATCACTGGCCAGTCCCATGCCTCTGCCACCCTCAAATTCTGGTCTAGAGCTTGCTATTGGAAGAAATGGAATTGGTGGTCCAAGCAATTTTGGCATGCCCTTGCCAATTGGATTTGATATGGGAGATGGAGTTTTGGGCTCCTCACCTGGGATGTCTAGTATGGGTGCTAGATCACCAATGGGAATGATGGGAAACGAAATTCAGCTTGAGAGATCTATGCTTATAGATCTTGCAGTAAATGCTATGGATGAATTAATTAAGATGGCTCAGCCAGATACCCCTCTTTGGATTAAGAGTTCTGATGGCAGGAATGAAGTACTGAACCGTGAGGAGTACACAGGAATGTTTTCTCCTTATATTGGATCAAAACCTGCTGGTTATGTAACTGAAGCTACAAGAGGAACTGGAGTAGTATTAGCCAGCAGTTTGGGCATTGTGGAAACATTGATGGATGTGGATCGATGGTCGGAGATGTTTTCATCTATGATTGCTAGTGCTGCCACTCTGGAAGTACTATCTAGTGGCACGGGTGGAACCAGAAATGGAGCTTTGCAAGTGATGCTTGCTGAGGTTCAATTGCTTTCTCCACTAGTCCCTGCTCGTCAATTGACTTTCCTCAGGTTTTGCAAGCAGCATGCCGAAGGTTTATGGGCTGTGGTTGATGTTTCAGTTGACATTGGTCGTAATGTTACCAATTCACATCCATTAATGAGCTGCAGGAGGCTTCCCTCTGGCTGTGTTATTCAGGATATGCCCAATGGTTTCTCCAAGATTACTTGGGTTGAACATTCCCAATATGATGAAAGTGTCATCCACCAACTTTATCGCCCATTGGTTAGTTCTGGCATTGGCTTTGGTGCTCAGAGATGGATTGCCACCCTCCTAAGGCAGTGTGACTGCTTGGCAATCCTCATGTCCCCTCCCGGCCCGTCTGAGGACCCCACAGTCATTAGCCCAGCGGGTAGGAGAAGCATGCTGAAGCTCGCACAGCGCATGACCGAGTACTTCTGCTCAGGGATCTGTGCTTCATCTGCACGCAAGTGGGACATACTGCACATTGGTAATCTGTCTGATGACATGAGAATCATGGCCCGGAAAGTTGTGGATGACCCAACTGAGGCTCCTGGCATTGTGCTGAGTGCTTCAACTTCTGTTTGGATGCCAGTGTCATGGCAAAGGGTGTTTGACTTTCTGCGTGATGAAAATTTGAGAGGCGAGTGGGACATGCTGTCCAAAGGTGTAATGAAGGAGATGCTCCATATTGCTAAAGGACAAGAACGTGGAAATTGTGTTTCCATCCTTCATTCTGCTAATAGCGAGTGCAATGTGCTATATCTGCAAGAGTCATGGACTGATGCCTCCGGCTCGATGGTAGTGTATTCCCCAATCAACATGCAAGCCTTGAACATGGTGATGACCTGTGGAGATTCATCGTTTGTTGCTCTCCGTCCGTCAGGCTTTGCTATTCTGCCAGATGGCCCTTCGAACAACGGTGATGGCAGTGACTGTGGCGGCGGCTGCCTGCTCACAGTTGGGTTACAAATGTTGCAGAATGGCAACCACTCAGCCAAGTTCACAATGGAGTCAGTTGAAACTGTTAATACCCTCATCTCATGCACCATTCAGAAGGTCAAAGATGCACTAGGTGTTGCATGA 2229 0.4679 MEGHSDMGLIRENFDTSNLLGRLRDDEYESRSGSDNFDGGSGDDQDAGDDQPSKKKKKYHRHTPQQIQELEAFFKECPHPDEKQRTDLSKRLGLENKQVKFWFQNRRTQMKTQLERHENMILKQENDKLRAENSVMKEALANPICNNCGGPAIPGQISLEEHQTRIENARLKDELNRICALANKFLGRPLSSLASPMPLPPSNSGLELAIGRNGIGGPSNFGMPLPIGFDMGDGVLGSSPGMSSMGARSPMGMMGNEIQLERSMLIDLAVNAMDELIKMAQPDTPLWIKSSDGRNEVLNREEYTGMFSPYIGSKPAGYVTEATRGTGVVLASSLGIVETLMDVDRWSEMFSSMIASAATLEVLSSGTGGTRNGALQVMLAEVQLLSPLVPARQLTFLRFCKQHAEGLWAVVDVSVDIGRNVTNSHPLMSCRRLPSGCVIQDMPNGFSKITWVEHSQYDESVIHQLYRPLVSSGIGFGAQRWIATLLRQCDCLAILMSPPGPSEDPTVISPAGRRSMLKLAQRMTEYFCSGICASSARKWDILHIGNLSDDMRIMARKVVDDPTEAPGIVLSASTSVWMPVSWQRVFDFLRDENLRGEWDMLSKGVMKEMLHIAKGQERGNCVSILHSANSECNVLYLQESWTDASGSMVVYSPINMQALNMVMTCGDSSFVALRPSGFAILPDGPSNNGDGSDCGGGCLLTVGLQMLQNGNHSAKFTMESVETVNTLISCTIQKVKDALGVA 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02621 742 Gene3D - 266 477 IPR023393 -
Pumo6g02621 742 SMART START_1 267 491 IPR002913 GO:0008289
Pumo6g02621 742 Pfam START domain 268 490 IPR002913 GO:0008289
Pumo6g02621 742 ProSiteProfiles START domain profile. 258 494 IPR002913 GO:0008289
Pumo6g02621 742 MobiDBLite consensus disorder prediction 1 64 - -
Pumo6g02621 742 FunFam Homeobox-leucine zipper protein HDG1 41 129 - -
Pumo6g02621 742 SUPERFAMILY Bet v1-like 510 711 - -
Pumo6g02621 742 SUPERFAMILY Homeodomain-like 36 113 IPR009057 -
Pumo6g02621 742 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Pumo6g02621 742 CDD homeodomain 56 113 IPR001356 GO:0003677
Pumo6g02621 742 SMART HOX_1 55 117 IPR001356 GO:0003677
Pumo6g02621 742 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Pumo6g02621 742 Pfam Homeodomain 56 111 IPR001356 GO:0003677
Pumo6g02621 742 Coils Coil 107 142 - -
Pumo6g02621 742 Gene3D - 43 129 - -
Pumo6g02621 742 SUPERFAMILY Bet v1-like 260 491 - -
Pumo6g02621 742 CDD START_ArGLABRA2_like 262 489 - -
Pumo6g02621 742 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 54 739 IPR042160 -
Pumo6g02621 742 MobiDBLite consensus disorder prediction 18 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02621 Pumo-Chr6 62493041 62499659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02621 24 739 Homeobox Transcription Factor Family AT3G61150 55.270 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pumo6g02621 START 7.9e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02621 K09338 - gmx:100820113 1300.42