Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02616 ATGGCTCCGCCGCCGCCGGTGGAACACAACGGCGACTCCACCACCACCGCCTCTGCCTCCGCCTCCGCCTCCGCGGAGGCTCAGAGATCCATTCCCACGCCGTTTCTCACCAAGACCTATCAACTCGTCGACGACCAATCCATCGACGATGTTATTTCCTGGAACGACGACGGATCAACGTTCATCGTTTGGAACCCTACCGTCTTCGCCAGAGACTTGCTTCCTAAATATTTCAAACACAACAATTTCTCCAGCTTCGTTCGCCAACTCAACACTTACGGATTCAGAAAAGTTGTACCTGATCGGTGGGAGTTCTCGAACGAGTGTTTCCGCCGAGGCGAGAAGCGGCTTCTGTGCGAAATTCAGCGGCGGAAGATCTCGTCGTCGGCGCCTTCTCCGACGGCGCCGGCGACGGTAGCGGTTCCGGCGCCGATGCCGCTGACTGCGATAACGATCATATCGCCGTCGAACTCCGGTGAGGAGCTGGTGATATCGTCGAACTCGTCGCCGTCGCGAGCGCCGGCGGAGCTTCTCGACGAGAACGAGAGGCTGAGGAAAGAGAACGTTCAGTTAACGAAAGAGCTCGCGGAGATGAGATCGCTCTGCAACAATATATACACTCTCATGTCGAATTACGCAAACGCCAACGGAAATGGAAACAGTAACGGTAACGGCAGTTACCAAACCGACGGCGGCGCCGGTGGCGCGCAGGGAAGCAGGGAGTCCGGCATGACGGCGGTGAAGCCGCTAGATTTGATGCCGGTGAAACGGAGCTCCGGCGAGGACGCGGCGGAGACGGCGCCGGAGGAGATGAATCCGAAGCTATTCGGTGTGGCGATTGGAGCGAAGCGAGCGAGAGAGGGAGGAGGAGGAATTGGTGGAGATTGTGGAGAAGGAGGTGGAGGAGAGGAAGATACGCTGCTGCGGCTGCATAACGCGGGTTCTGCGGACGTGAAATCAGAGCCGTTGGATTGCCAGAACCATCGCGAGAATCAGGAAACGCCGTGGTTGAGTCAGTGTCACAGGGCAAATCAGAGGGTGTGTAACTGA 1050 0.5771 MAPPPPVEHNGDSTTTASASASASAEAQRSIPTPFLTKTYQLVDDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGEKRLLCEIQRRKISSSAPSPTAPATVAVPAPMPLTAITIISPSNSGEELVISSNSSPSRAPAELLDENERLRKENVQLTKELAEMRSLCNNIYTLMSNYANANGNGNSNGNGSYQTDGGAGGAQGSRESGMTAVKPLDLMPVKRSSGEDAAETAPEEMNPKLFGVAIGAKRAREGGGGIGGDCGEGGGGEEDTLLRLHNAGSADVKSEPLDCQNHRENQETPWLSQCHRANQRVCN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02616 349 Gene3D - 27 125 IPR036388 -
Pumo6g02616 349 SMART hsfneu3 31 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g02616 349 MobiDBLite consensus disorder prediction 9 29 - -
Pumo6g02616 349 ProSitePatterns HSF-type DNA-binding domain signature. 74 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g02616 349 PRINTS Heat shock factor (HSF) domain signature 35 58 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g02616 349 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g02616 349 PRINTS Heat shock factor (HSF) domain signature 86 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pumo6g02616 349 SUPERFAMILY "Winged helix" DNA-binding domain 32 124 IPR036390 -
Pumo6g02616 349 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 214 IPR027725 -
Pumo6g02616 349 FunFam Heat stress transcription factor B-4 27 125 - -
Pumo6g02616 349 MobiDBLite consensus disorder prediction 1 29 - -
Pumo6g02616 349 MobiDBLite consensus disorder prediction 223 242 - -
Pumo6g02616 349 Coils Coil 181 201 - -
Pumo6g02616 349 Pfam HSF-type DNA-binding 35 124 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02616 Pumo-Chr6 62391628 62393289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02616 19 349 HSF AT5G62020 47.414 2.50e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pumo6g02616 HSF_DNA-bind 1.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02616 K09419 - gmx:100812267 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02616 6 62391628 62393289 Pumo6g02616 6 62391628 62393289 ECH
Pumo6g02616 6 62391628 62393289 Pumo3g00915 3 14207983 14209334 PCT