Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02610 ATGTTACTTCCAATGACGCCCCCAGCAAGAGCAACACTTACCATGTTACTCGTGATCTTCGTCTTCGCCCTCCTCATCACCGCATTCTGCTCCATCTTCATTCACTACTGCTCCTACGAGCAGCCCCACGCGCTTCCGCAGACCACGCGCGGAACCGACCCGCGCGTGCTCGCCACGTGCCCCGTCATGTCCTACTCCGCAGTGAAACTGAGACACCTCGGACCGCAAAACGCGGCGTTTCAGTGCGCGGTGTGCTTGGCGGAGTTCGACGACGCGGACGCGCTTCGGCTCTTGCCCAAGTGCGGTCACGTGTTCCACGCGCACTGCATCGACGCGTGGCTCGCGGCGCACGTGACCTGCCCCGTGTGCCGCGGCGAAGTGAGAGTGGAAATCGAGGGGGAGCCACGTGCGCGGCACGTGTTCGAGGGAAGTTCCAGGGTGCTTCTGAGGTCGCATTCGACGGGTCACTCGTTGGAGAGGTTGCCCGAGGAAGTGATGAAGAAGGTTCTGGAAGATGCTGAACGTGGCAGTGCGATGATGATGAAGCGTTCCGCGAGCTACGACGTCGTTTTGCTGAGTGTGGAAGGGGGTGAGAGCAGTAGTAGTAGTAATAATAATAATAATAATAATAATAATAATAACCGGTGGGTTTTGTCAATGACGCCTCCTTTTGTTTCTCGCGGTTCGGGTTCGTCGAATGTTGGCACCGCGTGTTCGGGGTTTCCGAGGTTTTGGGGTGCTTCTGTTGTGAGAGAAGAGAAAGAGTGTCAAGGGAGAACGGTTCCGGTTTTTCATTGTGAAGTTTGA 807 0.5626 MLLPMTPPARATLTMLLVIFVFALLITAFCSIFIHYCSYEQPHALPQTTRGTDPRVLATCPVMSYSAVKLRHLGPQNAAFQCAVCLAEFDDADALRLLPKCGHVFHAHCIDAWLAAHVTCPVCRGEVRVEIEGEPRARHVFEGSSRVLLRSHSTGHSLERLPEEVMKKVLEDAERGSAMMMKRSASYDVVLLSVEGGESSSSSNNNNNNNNNNNRWVLSMTPPFVSRGSGSSNVGTACSGFPRFWGASVVREEKECQGRTVPVFHCEV 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02610 268 MobiDBLite consensus disorder prediction 198 218 - -
Pumo6g02610 268 ProSiteProfiles Zinc finger RING-type profile. 82 124 IPR001841 -
Pumo6g02610 268 SUPERFAMILY RING/U-box 76 130 - -
Pumo6g02610 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 132 IPR013083 -
Pumo6g02610 268 SMART ring_2 82 123 IPR001841 -
Pumo6g02610 268 CDD RING-H2_EL5-like 81 124 - -
Pumo6g02610 268 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 13 204 - -
Pumo6g02610 268 FunFam E3 ubiquitin-protein ligase ATL6 40 130 - -
Pumo6g02610 268 Pfam Ring finger domain 81 124 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02610 Pumo-Chr6 61753102 61753908 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02610 13 251 Rapid Response to Elicitors AT3G05200 32.039 1.92e-35 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02610 K10664 - gmx:102665105 338.961