Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02609 ATGGAGCCAGTTCCCACCTACATCACCCACCACAGCTGGGAGCCCTCGGTTGCCATCACCGTCGGAGCCATCATCTTCGCGCTCCTCGTGATGGGCATCATCTCCATCTACCTCCGCCGGTGCACGGAGTCCCGCATCATCATAACCACCCAAACAACCGTCCCCTGCTCCTGCTCGCAGGGGATCAACAGGGAGCTCCTCAACACGTTCCCCACCCTCTTCTACTCCAACATCAAGGACATCAAGAAGGGAAACGAAACGCTCGAATGCGCGGTGTGTCTAACGGATTTTGCAGACAAAGATGCCCTGAGGCTGCTCCCCAAATGCAATCACGTGTTCCACCCTCACTGCATTGATTCCTGGCTCGCGTCCCACGTGACGTGCCCCGTTTGTCGCGCGAATCTCAGCCAGGATTCGTGCCATGTTGCCATAACAGTTCCAGTCAGTTCCCATCACGACGAGGAAGGTTCGGAAAACGCAAATGATGTGACTCAAGTTGAGCAGACTCCAAGCAATGACGCCAGCCAAAGGAACCTTTCGAGGTCGAACTCGACGGGGCATTCTCTCGTGGAGGAGCAAGGGAAGGGTGTGGAGAGGTACACGTTGAGGTTGCCCGAAGACGTGAGGAGGTACATTCTGGTGAACCATGGAAGGAGTGTTCAACGTTCCGCGAGTGTTAAGGGGTTGTGTTGGAGTGACAGTGAAGAGAGTTATGCAGCAGCAGTAGGGAAGAGGGTGAATGGTGAGGTGAGGGTGGAGAAGAGGTGGGTGATTTGCACGCCGCCATTTGTGGCGCGCCATGGTTGA 807 0.5576 MEPVPTYITHHSWEPSVAITVGAIIFALLVMGIISIYLRRCTESRIIITTQTTVPCSCSQGINRELLNTFPTLFYSNIKDIKKGNETLECAVCLTDFADKDALRLLPKCNHVFHPHCIDSWLASHVTCPVCRANLSQDSCHVAITVPVSSHHDEEGSENANDVTQVEQTPSNDASQRNLSRSNSTGHSLVEEQGKGVERYTLRLPEDVRRYILVNHGRSVQRSASVKGLCWSDSEESYAAAVGKRVNGEVRVEKRWVICTPPFVARHG 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02609 268 Pfam Ring finger domain 89 132 IPR001841 -
Pumo6g02609 268 SUPERFAMILY RING/U-box 75 138 - -
Pumo6g02609 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 139 IPR013083 -
Pumo6g02609 268 MobiDBLite consensus disorder prediction 161 190 - -
Pumo6g02609 268 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 10 237 - -
Pumo6g02609 268 CDD RING-H2_EL5-like 89 132 - -
Pumo6g02609 268 SMART ring_2 90 131 IPR001841 -
Pumo6g02609 268 MobiDBLite consensus disorder prediction 151 192 - -
Pumo6g02609 268 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Pumo6g02609 268 FunFam E3 ubiquitin-protein ligase ATL6 50 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02609 Pumo-Chr6 61741984 61742962 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02609 2 213 Rapid Response to Elicitors AT3G05200 38.776 1.99e-48 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02609 K10664 - gmx:100782532 406.757