Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02605 ATGGGCGTGAAGAATCTGTGGGACGTCCTCGAATCGTGCAAGAAAACGGTTCCCCTTCACCACCTACAGAACAAGAGGGTGTGCGTGGACCTCTCGTGCTGGATGGTGCAGCTTCACAGCGTGAGCAAGTCGCACTCCTGCGTCAAGGAGAAAGTGTACCTCAGAGGACTCTTTCACAGACTCAGAGCACTCATTGCGCTCAATTGCAGCCTCGTCTTCGTCGCAGATGGATCAATTCCTGCCATCAAATTATCAACCTATAGGCGTCGCTTAAATGTTGGAAAGGAGGTACAGGTAGCACAAAATGAAACTAACTTACAGAAAGCGACTTCACTACGGAGAAACATGGGGTCTGAGTTTTCTTGCATGATCAAAGAGGCTACAGTCTTGGGGATGGCTCTTGGTATTTCTTGTTTGAATGGGATTGAAGAAGCTGAAGCTCAGTGTGCTTTGTTGAATTTTGAATCATTATGTGATGGATGTTTCAGTTCAGATTCGGACATATTCCTTTTTGGTGCAAGGACAGTGTATAGGGATATCTGCCTTGGAGATGGTGGATATGTTGTTTGTTATGAGATGACAGATATTGAAAGAAAACTTGGATTTGGAAGGGACTCATTGATTGCTCTCTCCTTGCTTCTTGGCAGTGACTATTATCAAGGAGTTCATGGTCTGGGTCCAGAGTCGGCTTGTCAGATAGTCAAATCAATTGGAGACAAATATATTCTTAAAAAATTTGCTTCTGAAGGACTTGGATGGGTGAAAAAAAGAAAGGGAGGTGAGAATGATTTACGGCCAGATGATAACATTTTACAAGTAATTAATGCTTATATGAAGCCAAAATGTCACCCAGCAGATTCAGATATTGTGCACAAGGCTCTTGCTCAATATCCGTTTCAACGTACTAAACTCCAGCAGATATGTGCAGGATTCTTTGAGTGGCCTTCAGAGAAAACAGATGGGTATATCCTGCCAAGTATAGCTGAAAGAGATTTACGACGATTTGCCAATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAGATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAGGGAGAGAATGCTATGAGGTTTCTTGGGAAGGAATGGATGGACTTGAAACTTCAATAGTACCTGCAGATCTTTTAGAAAGTGCCTGTCGCGAGAAGATTTTGGAGTTCGAGGAAAGAAAAGCTCAACGGAAGAAACAAAATATTCAGAAAAGAAAACCAAAGAAAAAGGAAACTAATTCATCTGTGGCGGAGCTTGATCTAAAACTTCAGAACTTGTTGCTTGATATTAATTTGAGAGACGAAGCCAACTTCAATGCCTCTGATTCTTCAGGAAGGCTATCAAATATTACAACTGCTATGGCTGAAGCTGATCTGAATACCACAGACTTGTTGCCCCTATCACATGACATAGAACACACTGGGTTAATTCAGAATACTAGCAACATATATAGCAGTGAGGCGGTTTCCAGTATAGATAAAAATGAGATCATAGATCTTCTGAGCCCTTCCCCACCTAAGAAATCCAATTTTTCCTCAAAATGTCAGCAATCAAGTGACCAACATATTGAAGTTATTAATTTGAGTGATTCAGAAAATGACATGTCCGTTGAACACAAGCAGAAAGCGAAGGAGCTGAGATTGTTCTTAGCTAGTATTAGGAATGAAATTCATTGA 1725 0.4139 MGVKNLWDVLESCKKTVPLHHLQNKRVCVDLSCWMVQLHSVSKSHSCVKEKVYLRGLFHRLRALIALNCSLVFVADGSIPAIKLSTYRRRLNVGKEVQVAQNETNLQKATSLRRNMGSEFSCMIKEATVLGMALGISCLNGIEEAEAQCALLNFESLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMTDIERKLGFGRDSLIALSLLLGSDYYQGVHGLGPESACQIVKSIGDKYILKKFASEGLGWVKKRKGGENDLRPDDNILQVINAYMKPKCHPADSDIVHKALAQYPFQRTKLQQICAGFFEWPSEKTDGYILPSIAERDLRRFANLRLTSSEVGLNLPLHEIPVKCPVSEIIKSRRVQGRECYEVSWEGMDGLETSIVPADLLESACREKILEFEERKAQRKKQNIQKRKPKKKETNSSVAELDLKLQNLLLDINLRDEANFNASDSSGRLSNITTAMAEADLNTTDLLPLSHDIEHTGLIQNTSNIYSSEAVSSIDKNEIIDLLSPSPPKKSNFSSKCQQSSDQHIEVINLSDSENDMSVEHKQKAKELRLFLASIRNEIH 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02605 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 207 222 IPR006084 -
Pumo6g02605 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Pumo6g02605 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 131 148 IPR006084 -
Pumo6g02605 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Pumo6g02605 574 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 152 172 IPR006084 -
Pumo6g02605 574 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 202 338 IPR036279 -
Pumo6g02605 574 CDD PIN_GEN1 2 200 - -
Pumo6g02605 574 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 542 IPR006084 -
Pumo6g02605 574 FunFam Flap endonuclease GEN-like 1 202 259 - -
Pumo6g02605 574 SUPERFAMILY PIN domain-like 3 217 IPR029060 -
Pumo6g02605 574 Gene3D - 357 425 - -
Pumo6g02605 574 Gene3D - 203 259 - -
Pumo6g02605 574 ProSiteProfiles Chromo and chromo shadow domain profile. 358 418 IPR000953 -
Pumo6g02605 574 Pfam XPG I-region 135 217 IPR006086 GO:0004518
Pumo6g02605 574 Gene3D - 2 201 - -
Pumo6g02605 574 SUPERFAMILY Chromo domain-like 359 414 IPR016197 -
Pumo6g02605 574 CDD CD_CSD 360 408 - -
Pumo6g02605 574 SMART xpgn3 1 97 IPR006085 GO:0004518
Pumo6g02605 574 SMART xpgineu 132 202 IPR006086 GO:0004518
Pumo6g02605 574 FunFam flap endonuclease GEN-like 2 2 201 - -
Pumo6g02605 574 Pfam XPG N-terminal domain 1 91 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02605 Pumo-Chr6 61630404 61646440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02605 1 238 Core DNA Replication Machinery Family AT5G26680 24.419 5.56e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02605 K15338 - gmx:100806919 1056.59