Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02569 ATGTCAGAATCCAAGGAAGAAAATCCTGACCTTCCTCCCAAGTCAAAGCCACAAGAGGAACATGGGTTTGCCATGGATTTTGACATTGGCCTTGAAAGTCTATGGCCCTTGGATCATATATCTTTGGTCTCTAACCCCATGTCTCCTTTTCTCTTATCCACTATCTCTGAACAACCTTTTTCTCCTGTCTGGGCTTTTTCTGATGTTGAAGATGACAGGCAAATCAGGATTGCAGCTTCAGGTAATACAGATACAATAACTGAAAATCCAGTTGAAAATGATGACAAGAAAAAAACTGTGTCACCCCTTGTAGCTCTGCCACCTTCAGAAAATCCAGATGGTTATTGTCTAATCAAGGAAAGAATGACACAAGCACTTCGCCACTTCAAAGAGTTAACTGAACAGAATGTTCTTGCTCAGGTTTGGGCACCTGTGAGGAATGGAAACCGGTATGCACTTACAACTTCAGGCCAACCATTTGTTCTTGATCCACATAGCAATGGACTCCATCAGTATAGAACAGCTTCCCTGATGTATATGTTCTCTGTGGATGGAGAGAATGATGAGATCCTGGGACTTCCCGGCCGAGTTTTTCAGCATAAAATTCCAGAATGGACTCCCAATGTTCAGTATTATTCTAGTAAAGAGTATCAGCGCCTAAATCACGCACAACATTACAATGTTCGCGGAACCTTGGCCCTGCCTGTGTTTGAGCTTGCAGGACAGTCATGTGTGGCTGTAGTGGAGTTGATAATGACTTCACAGAAGATTAACTATGCTCCTGAGGTTGATAAAATCTGCAAAGCCCTTGAGGCAGTTAATTTGAGGAGTTCAGAAATTTTGGAGCATCCATACAATCAGATTTGTAATGAAGACCGCCAGTACGCATTAGCCGAGATTTTGGAGATACTGACAGTTGTGTGTGAAACTCATAGTTTGCCTCTGGCACAAACATGGGTTCCATGTAAGCATCGGAGTGTCTTGGCACATGGCGGTGGTCTTAAGAAAAGTTGCTCAAGTTTTGATGGTTGTTGCATGGGGCAAGTTTGCATGTCTATAACTGAGGTAGCATTCTATGTAATAGATGCTCATACATGGGGTTTCCATGAGGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCTGGGAGAGCATTTTTGTCCCACAACATGTGCTTCTGTGGAAACATTACCCAGTTCTGCAAAACTGAATATCCCTTGGTACATTATGCTCTCATGTTTGGTTTAACCAGCTGTTTTGCAGTATGCTTAGAAAGCTCTCTTACAGGAAATGATGATTATGTACTAGAGTTTTTTCTGCCTCCTGGGATCACAGACTTTAATGAACAAAGAAGATTGTTGGGATCCATATTGGCAACAATGAAGCCACATTTTCAGAGTCTTAAGATTGCTTCTGGTGTTGAACTTGAGGAGAATGCTTCAATTGAAATTATAGAAGCAAAAAATAAAAGTGTTCATTTGAGGTTTGAATCGATTCCAATTACTCAATCTTCCAAGTCACCACCTAGACATGCCTCACCAAATATGGGGGAGGGGCTGCCACTGGAGCCATCAGAACAGAAGATAATGGCATACTTTGATGGTATAAATGATGGAGGGAGTCTTGGTGATAATGCAGGTGGACACATTGATCAGAACACTTCCTTAGAGACCAAAACCAAAAAGAAACCCTCAGAGAGAAAACGCGGAAAAGCTGAGAAATCAATTAGTCTTGATGTTTTGCAACATTACTTCACAGGAAGCCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAGCGCATCTGTAGGCAGCATGGGATATCGCGTTGGCCATCTCGAAAGATCAAAAAGGTTAACCGTTCCCTGTCTAAGCTCAAGTGTGTTATTGAATCAGTCCATGGTGCTGAAGGAGCATTTGGTTTGAACTCTCTAAGTACTGGTTCATTCCCCTTTTCTGAGCTTTCCACTTCAAACAAGTTCAACCGCCAAACCTCGCTAACCATTAGGCCATCAGAACCTAAGATGAATGAAAATGATTTTGATGCTTATAGAGCATCAGAATCCAACAGACAAGCTGGGATGGAAGATCAATTCCTAGGACTAGGAACAAAGACACAAAGTCCTGAGAAAGTGATTAATGATAAAGGAGGGGCCATTCAGGAGATTGGCTCTAATGGCACAAACAAGTTAAGAACTGGCAGTGGCTCAAGTGAAGGCAGTGCAAATCCTTCTCCTCATGATTCATGCCAAGGTAGTCCCCCAAATGAAATTTCACCTCCAAAAGATATATTTGTAAAAAGCAACAGTGAGCAATGTCTTGTGTTAAGGGGATCACTGGGGTCAACAACACTGCACTCAACTAGTACACCAAACCGCGCAATTGCATACCCTATGCCTCACATTCTGGAAACAACAGAACCTCAAGAACCATTTGGAGGACAGCTACTTGAGGGTGCTGGTAGTTCTAAGGACTTGAGAAATCTATGTCCTTCAGCAGATGCTGTTTTGGAGGATCAGGTTCCAGAAGCTTGCAGGATGAATCCTCAATGTTCTGATTTGGCTGCTGTGCAACACATGGATACCCCTAATAACACTCTGACTCCCTTTGCAGTTAGGAAAGAGGTGAAGAGTGTGACTATTAAGGCAACATATAAAGATGATATCATAAGGTTTAAGGTTTCTTTGAACTGTGGTATTGTGGAATTGAAAGAAGAAATTGCCAAAAGATTGAAACTAGAGGTGGGAACATTTGATATCAAGTATCTGGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGACATCTCAAGATCATCAGGCAGCAACATAATCAGGCTTGTGGTTCATGATATACTGCCCATTCTTGGAAGCTCTTGTGAGAGCTCAGGAGATTGGAAAGGTTGTATATAG 2955 0.424 MSESKEENPDLPPKSKPQEEHGFAMDFDIGLESLWPLDHISLVSNPMSPFLLSTISEQPFSPVWAFSDVEDDRQIRIAASGNTDTITENPVENDDKKKTVSPLVALPPSENPDGYCLIKERMTQALRHFKELTEQNVLAQVWAPVRNGNRYALTTSGQPFVLDPHSNGLHQYRTASLMYMFSVDGENDEILGLPGRVFQHKIPEWTPNVQYYSSKEYQRLNHAQHYNVRGTLALPVFELAGQSCVAVVELIMTSQKINYAPEVDKICKALEAVNLRSSEILEHPYNQICNEDRQYALAEILEILTVVCETHSLPLAQTWVPCKHRSVLAHGGGLKKSCSSFDGCCMGQVCMSITEVAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAFLSHNMCFCGNITQFCKTEYPLVHYALMFGLTSCFAVCLESSLTGNDDYVLEFFLPPGITDFNEQRRLLGSILATMKPHFQSLKIASGVELEENASIEIIEAKNKSVHLRFESIPITQSSKSPPRHASPNMGEGLPLEPSEQKIMAYFDGINDGGSLGDNAGGHIDQNTSLETKTKKKPSERKRGKAEKSISLDVLQHYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGAEGAFGLNSLSTGSFPFSELSTSNKFNRQTSLTIRPSEPKMNENDFDAYRASESNRQAGMEDQFLGLGTKTQSPEKVINDKGGAIQEIGSNGTNKLRTGSGSSEGSANPSPHDSCQGSPPNEISPPKDIFVKSNSEQCLVLRGSLGSTTLHSTSTPNRAIAYPMPHILETTEPQEPFGGQLLEGAGSSKDLRNLCPSADAVLEDQVPEACRMNPQCSDLAAVQHMDTPNNTLTPFAVRKEVKSVTIKATYKDDIIRFKVSLNCGIVELKEEIAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDISRSSGSNIIRLVVHDILPILGSSCESSGDWKGCI 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02569 984 ProSiteProfiles RWP-RK domain profile. 562 645 IPR003035 -
Pumo6g02569 984 MobiDBLite consensus disorder prediction 727 762 - -
Pumo6g02569 984 MobiDBLite consensus disorder prediction 1 20 - -
Pumo6g02569 984 MobiDBLite consensus disorder prediction 724 769 - -
Pumo6g02569 984 ProSiteProfiles PB1 domain profile. 884 966 IPR000270 GO:0005515
Pumo6g02569 984 Pfam RWP-RK domain 578 625 IPR003035 -
Pumo6g02569 984 MobiDBLite consensus disorder prediction 545 575 - -
Pumo6g02569 984 CDD PB1_NLP 885 965 IPR034891 -
Pumo6g02569 984 Gene3D - 881 965 - -
Pumo6g02569 984 PANTHER PROTEIN NLP8 57 978 IPR045012 GO:0003700
Pumo6g02569 984 MobiDBLite consensus disorder prediction 502 523 - -
Pumo6g02569 984 MobiDBLite consensus disorder prediction 557 575 - -
Pumo6g02569 984 SMART PB1_new 884 966 IPR000270 GO:0005515
Pumo6g02569 984 Pfam PB1 domain 885 965 IPR000270 GO:0005515
Pumo6g02569 984 FunFam RWP-RK domain-containing protein 881 965 - -
Pumo6g02569 984 SUPERFAMILY CAD & PB1 domains 884 969 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02569 Pumo-Chr6 60135379 60139948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02569 252 979 NLP Transcription Factor Family AT4G24020 53.061 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pumo6g02569 PB1 1.3e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02569 - - gmx:100780901 1803.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02569 6 60135379 60139948 Pumo3g00959 3 14793560 14798474 PCT