Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02561 ATGCCAATTGCAAAACTCAAAGCCTCTGGCACTCCAGATGTCATGAAAACAGAAGACAAGATAGATACCATAATCAGACAGGCAATTGGCAAAGAACCTTTTGTTCCTTTTCCAAGGGCCAGTGACAGCCCTGTACAGTGGATTCAATTACTCCATGCTTTAGATCCGCAAGGTGTCAGCAATTCTTTTTCAGAATTTCCAGGGTGGCCTTTGTTCTCTCCTCTGAAGGTTCAGTTGCAGAAGTGTGACAAATGTTCTCGAGAGTTTTGCTCCCCCATTAACTATAGAAGACATATACGTGTACATCATCGGTTGAAAAAGCTTGATAAGGATTTTACTAAAACTAGGGATCTTTTAGGAGCATATTGGGATAAGCTCTCTGTAGAAGAGGCAAAGGAAGTTGTATCATTCGAAAATGTGGTACTGGAGGAAGTTCCGGGTTCTTCAATTTTAAAATCTCTGACAACTCTTATTCAAAACCAAGGATTTTATTCATTTCCTCAGTATTATCTGATGGCTGGTGCTGCCCTTTTGGATATTGTTCAATCTAAACCTTCCAGCTTTCCTATATCTTCCCAGGAGTTGTTCAGTGTCCTTGATGATGCTAGTGAAAAAACATGTTTATGTGGGACAGCAGAGTCAATGCAAAGATATGTATTTGATGGAGAGGCTGGAAAAATTGGTCTTGAACCAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAACAGAAATTGGTGAAGGCATGGCTTGCTGACAAGGATGCTGAAGCACTAAGGTGCCAGAAGCAATTGGTGGAGGAGGAGGAAGCTGCTCAGAAAAGACAAGCTGATATTTTGGAGAGGAAACGCCAGAAGAAGCTTAGACAAAAAGAGCAGAAAGCTAGGGAACAAAGACACAAAGCTGAGGCAGAAATTAAAGGCGATATTGACAGTACTGTAAAGGCTTTATCACCGGCAGAAGCATCTTTAGATACATACAATTTTGAAGCTCATAATCCAAATACATTTTCAGATAACGCAGCTTCACCTGTACCTTTCCAATGTCCTGACACCAATGAAGAAATAAATGGGGATATTCATTCAGAGTCTGAAACTGTCACTGATCAGAATATTAAGAGACAGTCAGTACATGGACATAAACATCAGCGCCAAGCAGTTGCCAGACAACAAGGGCTGCCAAAATCACAATGGGCTGTAGCCAATGGTTTGCATACAAACCAGAATTCTCCAGTGTCAAAACTAGAAGTCAATCAGAAATATGAAACCCACTGTGATCAAAAGGCATCAGCTACAGTTAATGGTAGTAAAGTATGGAGTCGAAAGTCTAAAGCAGAAATTAACAAGGTGGTTTTAAAAACCACAACAGAGAAAGAACCAGACCAAGTTAAGAATCAAGAAGTTTTGATAGGATCTATACCTGTTAATCTTGGCAATTGCAGCCAATCAGAGGGTAATATGGTGGCTTCTCAAAAGGACTGCGTGGTTGAGAACGTGGGAAAGCAAAATAATTCTCGGGATAAGCCAATGAAAACTGATCTTGTCATGGGTGGCAACAATCGCTCAACAGTTAAGCTTTGGAGGCCTGTTAGCCGGCTTGAAACCAAAGATCCACTTCCAGTTCAAAGTGGTGGGACAGAAGTTGATGCAGTTCATGGAAATGGTCAAAACTTGTCAGGTCCAAGTTCTTTAAGGGTATCTAGTACAGATGGTGGTGATGTTGGTTTTGAAAAGTATTTCTCCCATCCAGAGGGTAAAGCGGTTCCAGGAAGCTTACAGTTCGACATCCAGGCTGCAAAAGCTTTTCTTGCACAAAGATGGAAGGAAGCTATCACATCAGAACATGTGACATTGGTCATTTGCCCCGACTCAGAACCTCCTGGGTGTGAGGAGATACAGGATTTGAAAACAGCAGCATGTCAATCTTCTGATGTGGATAGATGCAACATTGTGGCAAATGCAGATAACAGAGTGCCTGCAACCTCCAGAGTTGCAAAATCCAAACCCAGATTGAAGAAGTCCGAAAAGGGAACCAAGATAAAGTATATTCCCAAACAGAAGACAAATACCTAA 2073 0.4144 MPIAKLKASGTPDVMKTEDKIDTIIRQAIGKEPFVPFPRASDSPVQWIQLLHALDPQGVSNSFSEFPGWPLFSPLKVQLQKCDKCSREFCSPINYRRHIRVHHRLKKLDKDFTKTRDLLGAYWDKLSVEEAKEVVSFENVVLEEVPGSSILKSLTTLIQNQGFYSFPQYYLMAGAALLDIVQSKPSSFPISSQELFSVLDDASEKTCLCGTAESMQRYVFDGEAGKIGLEPKNLVACTSFLLEQKLVKAWLADKDAEALRCQKQLVEEEEAAQKRQADILERKRQKKLRQKEQKAREQRHKAEAEIKGDIDSTVKALSPAEASLDTYNFEAHNPNTFSDNAASPVPFQCPDTNEEINGDIHSESETVTDQNIKRQSVHGHKHQRQAVARQQGLPKSQWAVANGLHTNQNSPVSKLEVNQKYETHCDQKASATVNGSKVWSRKSKAEINKVVLKTTTEKEPDQVKNQEVLIGSIPVNLGNCSQSEGNMVASQKDCVVENVGKQNNSRDKPMKTDLVMGGNNRSTVKLWRPVSRLETKDPLPVQSGGTEVDAVHGNGQNLSGPSSLRVSSTDGGDVGFEKYFSHPEGKAVPGSLQFDIQAAKAFLAQRWKEAITSEHVTLVICPDSEPPGCEEIQDLKTAACQSSDVDRCNIVANADNRVPATSRVAKSKPRLKKSEKGTKIKYIPKQKTNT 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02561 690 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Pumo6g02561 690 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 689 - -
Pumo6g02561 690 SMART c2h2final6 80 102 IPR013087 -
Pumo6g02561 690 MobiDBLite consensus disorder prediction 536 568 - -
Pumo6g02561 690 MobiDBLite consensus disorder prediction 660 690 - -
Pumo6g02561 690 MobiDBLite consensus disorder prediction 283 304 - -
Pumo6g02561 690 MobiDBLite consensus disorder prediction 549 568 - -
Pumo6g02561 690 Coils Coil 256 305 - -
Pumo6g02561 690 ProSitePatterns Zinc finger C2H2 type domain signature. 82 103 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02561 Pumo-Chr6 59979387 59989766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02561 19 687 C2H2 Transcription Factor Family AT4G25610 40.795 1.43e-145 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pumo6g02561 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02561 - - gmx:100809067 1253.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02561 6 59979387 59989766 Pumo6g02561 6 59979387 59989766 ECH
Pumo6g02561 6 59979387 59989766 Pumo3g00967 3 14838572 14843973 PCT