Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02548 ATGGCAGGTGAGGTGGTGAAGAAGGAAGAGTCTCTCAACCTGAAAATCACCAACAAGAGTCATGTGCAACCTGAGGAGAAAATTGGGAGGAAAGAGTACCAATTGATCACTTTTGATCTTCCCTACTTGGCCTTCTACTACAACCAGAAGCTACTGTTTTACAAGGGGGAAGATTTTGAGGGCATGGTCCAGAAACTGAAAATTGGACTTGGTGTGGTGCTGAAGGAGTTTCATCAACTTGCTGGTAAGTTGGGGAAAGATGAGGAGGGGGTGTTCAGAGTGGAGTATGATGATGACTTGCTTGGTGTGGAGGTTGTTGAGGCTGCTGCTGATGAGATTGGTGTGGATGATCTAACTGTGGCTGAAATTAGTAACACTAATTTGAAGGAGCTGATACCTTATAGTGGTATCTTGAATTTGGAAGGCATGCATAGACCCTTGCTGGCAGTTCAGTTAACGAAGCTCAAAGATGGGCTTGCAATGGGCCTGGCGTTCAACCACGCTGTCTTGGACGGGACTGCCACGTGGCAATTCATGACCTCATGGGCCGAGATCTGCAGTGGTTCACCTTCCACGTCAGCACCACCCTTCCTGGACCGGACCAAGGCCCGGAACACGCGCGTAATGCTGGACCTCTCGCTACCTGAGCCCAACGGCCCACCACCAACTTCCAACGGTGAGGCAAAGCCCGCGCCAGCTCTTAGGGAAAAGATCTTCAAATTCTCCGAGTCAGCCATCGACAAGATCAAGTCAACGGTCAACGAGAACCCTCCATCGGACGGCTCAAAACCATTCTCAACATTTCAGGCTCTTTCCTCCCACGTTTGGCGCCATGTAAGCCATGCACGTAACTTGAAGCCGGAGGACTACACCGTGTTCACCGTCTTCGCCGATTGCCGGAAGCGGGTGGACCCGCCGATGCCGGAGACCTATTTCGGAAACCTAATTCAGGCCATTTTCACTGTCACCGCGGTTGGGCTATTGTCGGCCCATCCGCCGCAATTCGGGGCTTCACTGGTCCAGAAAGCCATTGAAGCCCATGATGCCAAGGCTATTGATGAACGTAACAAGGAGTGGGAGAGTGCACCCAAAATTTTTCAATTCAAAGATGCTGGGGTGAATTGTGTGGCTGTGGGAAGCTCCCCAAGGTTTAAGGTTTATGACATTGATTTTGGGTGGGGGAAGCCAGAGAATGTGAGGAGTGGGACTAATAACAAGTTTGATGGGATGATTTACTTGTATCCGGGGAAGAGTGGAGGGAGGAGCATTGATGTGGAACTAACCTTGGAGCCTGAGGCTATGGAGAGGTTGGAGCAAGACAAGGCTTTTCTTTTGGAAGCATGA 1344 0.5052 MAGEVVKKEESLNLKITNKSHVQPEEKIGRKEYQLITFDLPYLAFYYNQKLLFYKGEDFEGMVQKLKIGLGVVLKEFHQLAGKLGKDEEGVFRVEYDDDLLGVEVVEAAADEIGVDDLTVAEISNTNLKELIPYSGILNLEGMHRPLLAVQLTKLKDGLAMGLAFNHAVLDGTATWQFMTSWAEICSGSPSTSAPPFLDRTKARNTRVMLDLSLPEPNGPPPTSNGEAKPAPALREKIFKFSESAIDKIKSTVNENPPSDGSKPFSTFQALSSHVWRHVSHARNLKPEDYTVFTVFADCRKRVDPPMPETYFGNLIQAIFTVTAVGLLSAHPPQFGASLVQKAIEAHDAKAIDERNKEWESAPKIFQFKDAGVNCVAVGSSPRFKVYDIDFGWGKPENVRSGTNNKFDGMIYLYPGKSGGRSIDVELTLEPEAMERLEQDKAFLLEA 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02548 447 FunFam Tryptamine hydroxycinnamoyl transferase 221 441 - -
Pumo6g02548 447 Gene3D - 11 211 IPR023213 -
Pumo6g02548 447 Pfam Transferase family 14 442 - -
Pumo6g02548 447 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 16 444 - -
Pumo6g02548 447 Gene3D - 220 440 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02548 Pumo-Chr6 59599268 59602898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02548 64 446 Monolignol Biosynthesis Gene Families AT5G48930 27.340 1.75e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02548 K19747 - gmx:100790669 868.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02548 6 59599268 59602898 Pumo6g02548 6 59599268 59602898 ECH