Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02540 ATGGACTTATCAGTTAAGGTATTGAATTATGCTAAAGGGATTCCATTAGCTCTCAAGGTTTTGGGCTCATTGCTTTATGGTAGAACAAGGGAAGCATGGGAAAGACATGAGGAGATTATCGTGGCAGAAACGCTAGATAGCTGTGGTTTCTCTGCTAAGATTGGAATGGATGTTCTGAAAGATAGGTGCCTAATATCTGTTTTGGAAGGTAGAATTATGATGCACGATCTAATACAAGAAATGGGACAAGAAATTGTTCGTCAACAATGTGTCTATAATCCTGGAAAACGCAGCCGATTGTGGAAGGTTGAGGAAATTTATCGTGTTTTAAGAAAGAACAAGGGGACAGATGCAATACAGTGTATATTACTAGACATATGCAAAATAAAAGAAGTTGAACTAGATGCTAAAACTTTCAAGAAGATGGACAATCTGAGGATGCTCCAGTTCTTCAAGCCCCGTGGCTATTGGAATGACTCAAATGTGTTTCTTCCATCATCATCTCTTGAAAGTCTGCCGGACAGTTTAAAAATTCTTCATTGGGATGACTTTCCTCAAAGATCTTTGCCGCCGAACTTTTGCCCAGAAAATCTAGTGAGGCTCGAAATGCTGTGTTGCCATCTTGAACAACTTTGGGAAGGAGATCAGCATTTACCGAATTTGAAAAGGCTGGACCTGAGTTATTCTCGGAAACTAATTCGAATACCGGACCTCTGTCTGTCACCAAATATTGAAGAAATAATTCTCAGTGACTGTGTTAGCTTGATTCAAGTTCACTCCTCACGTTTCCTCAGAAGGCTCAAATGTTTATGCTTAAATGGTTGTGTTGAGCTTAGCCTTTTAACTATTCCGAGCAATATTCTATTGACATCATCAGGGTTAATTCTTCTTTCCAATTGTCGCAAGCTTGAAACGTTTTCTATGGAGATTATCAGGAATGATTCTACTTTCAAAATGTTGTCACTGCAAGCTCTTGCATGCAGTAGTCCCTCAAGTGAAAGACTCTTGACTTCCCAAATTTTCTCAAATGGTTTTGGCAGATATCAAGAAGAGGAAGAAGAAGAAGAAGAAGACACGGCCAATAATTTAGACTTATTATACGCTGAAGTGTTGAGGGAAGGTGTGTCCTCAATATTTTCAACTCTGAATAAGCTATGTTGGTTAGATCTCTCTAATTGTGAATCCCTTACAAGCCTTCCAATTGACCTGTCTATGTTGACATTCCTAAAGAGACTTCATCTCCGTGGTTGCTCAAAATTGGAAAATTTCCCTGAAATTATGGGCAGAATGGAAAATCTAGTGGTTCTCGTCTTAGACCGAACAGCAATACGGGAACTACCTTCATCCTTGTGCCATTTGGTGCAGCTTGAAGAATTGAGCTTGCACGAGTGCACGAGTCTTGAGATTATTCCATCTTGCATTGGAAGTCTCAGCAAACTCTGCAACTTAGGCCTTACCTACTGTGAATCACTTGAAACTTTTCCCAGCAGCATTTTCAAATTGAAGCTGACAAAACTCGATTTGCATGGTTGCTCAATGCTGACGACCTTCCCAGACATCTTGGAGCCTACAGCAAATTTTGCTCACATTAACATGACAAAAACGGCTATTAGAGAACTACCTTCATCATTTAACAATTTGGTTGGACTTCGGACCCTGCGTCTGAACATGTGCACTGATCTCGAGTTACTTCCAAACAGCATTGTTAATCTAAACCTTCTCTCAGAGCTTGATTTTTCAGGGTGTGCCAAATTAACAGAAATACCTGAGATCATTGCTAATCTTTCAAGCTTGAAATTACTCGATTTAAGTGATTGCAAAAAGCTTGAATGCATCCCTCAGCTTCCACCATTTCTAAAACAATTATTGGCATTTGATTGCCCTTCCATTAGAACAGTGATGCCAAATTCGAGGATTCAAATCCCATCAGATTCCACAGAGGGTATCTTCAAATTTCATCTCACCAATAGTCAACAACTGGATCCAAGTGCTTATGTTAATATTGTGGATGATGCATGGCTTAGGATCACCGCGGGTGCATTTAGGTCTGTGTTCTTTTGTTTTCCAGGGAGTGCAATTCCTCATTGGTTCCCTTCTCGTGGCAAGGGACATTCAGTAACTATAAATACAGATTCTCTAAATTTGTGCAATGATAATAGGCTCATTGGTTTTGCTTTGTCTGTCGTTTTCGAACTGTTAGATACGAATGATGTTGAAGGAGGATATGGTTTTTTTAGTTACATTTTAAAATTTGGATCTGATGATGGCATGCACATTATTAACTACCATGATGAGCTAAGATCATTCTATTGGAAGGGACGAGAGAGAATTGCTGATCAAGATCACACACTCCTGTGGAAATATAACCTGGAATCCCCAAGCAAAAGCCTTATGCTCTGTCATGCTCACAGCTTCACTTTTGAGATCACCAACTATGATTATGGCCTTCGGAGGCGGCGATATTTCAAATCAATTTCCACTCTAAAAGAATGTGGAATATGCCCTCTTTATACCAAATAA 2520 0.396 MDLSVKVLNYAKGIPLALKVLGSLLYGRTREAWERHEEIIVAETLDSCGFSAKIGMDVLKDRCLISVLEGRIMMHDLIQEMGQEIVRQQCVYNPGKRSRLWKVEEIYRVLRKNKGTDAIQCILLDICKIKEVELDAKTFKKMDNLRMLQFFKPRGYWNDSNVFLPSSSLESLPDSLKILHWDDFPQRSLPPNFCPENLVRLEMLCCHLEQLWEGDQHLPNLKRLDLSYSRKLIRIPDLCLSPNIEEIILSDCVSLIQVHSSRFLRRLKCLCLNGCVELSLLTIPSNILLTSSGLILLSNCRKLETFSMEIIRNDSTFKMLSLQALACSSPSSERLLTSQIFSNGFGRYQEEEEEEEEDTANNLDLLYAEVLREGVSSIFSTLNKLCWLDLSNCESLTSLPIDLSMLTFLKRLHLRGCSKLENFPEIMGRMENLVVLVLDRTAIRELPSSLCHLVQLEELSLHECTSLEIIPSCIGSLSKLCNLGLTYCESLETFPSSIFKLKLTKLDLHGCSMLTTFPDILEPTANFAHINMTKTAIRELPSSFNNLVGLRTLRLNMCTDLELLPNSIVNLNLLSELDFSGCAKLTEIPEIIANLSSLKLLDLSDCKKLECIPQLPPFLKQLLAFDCPSIRTVMPNSRIQIPSDSTEGIFKFHLTNSQQLDPSAYVNIVDDAWLRITAGAFRSVFFCFPGSAIPHWFPSRGKGHSVTINTDSLNLCNDNRLIGFALSVVFELLDTNDVEGGYGFFSYILKFGSDDGMHIINYHDELRSFYWKGRERIADQDHTLLWKYNLESPSKSLMLCHAHSFTFEITNYDYGLRRRRYFKSISTLKECGICPLYTK 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02540 839 PRINTS Disease resistance protein signature 11 25 - -
Pumo6g02540 839 PRINTS Disease resistance protein signature 593 609 - -
Pumo6g02540 839 SUPERFAMILY L domain-like 376 615 - -
Pumo6g02540 839 Gene3D Ribonuclease Inhibitor 360 506 IPR032675 -
Pumo6g02540 839 Gene3D Ribonuclease Inhibitor 115 343 IPR032675 -
Pumo6g02540 839 Coils Coil 349 369 - -
Pumo6g02540 839 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 361 566 IPR044974 GO:0006952
Pumo6g02540 839 Gene3D Ribonuclease Inhibitor 507 645 IPR032675 -
Pumo6g02540 839 SUPERFAMILY RNI-like 176 441 - -
Pumo6g02540 839 Pfam C-JID domain 688 838 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02540 Pumo-Chr6 59405654 59417039 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02540 450 647 WRKY Transcription Factor Family AT4G12020 34.615 5.81e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02540 - - ccaj:109803335 1066.6